Mercurial > repos > iuc > ncbi_eutils_esummary

comparison esummary.xml @ 0:92bd8a680b9d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:41:02 -0400
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-1:000000000000 0:92bd8a680b9d
1 <?xml version="1.0"?>
2 <tool id="ncbi_eutils_esummary" name="NCBI ESummary" version="@WRAPPER_VERSION@">
3 <description>fetch summary of history/ids</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <version_command>python esummary.py --version</version_command>
9 <command detect_errors="aggressive" interpreter="python"><![CDATA[esummary.py
10 $db_select
11
12 @LIST_OR_HIST@
13
14
15 @EMAIL_ARGUMENTS@
16 > $default]]></command>
17 <inputs>
18 <expand macro="dbselect"/>
19 <expand macro="list_or_hist"/>
20 </inputs>
21 <outputs>
22 <data format="xml" name="default" label="Summary of NCBI Search"/>
23 </outputs>
24 <tests>
25 <test>
26 <param name="qss" value="id_list"/>
27 <param name="id_list" value="10239"/>
28 <param name="db_select" value="taxonomy"/>
29 <output name="default" file="esummary.tax.xml" ftype="xml"/>
30 </test>
31 </tests>
32 <help><![CDATA[
33 NCBI Entrez ESummary
34 ====================
35
36 Responds to a list of UIDs from a given database with the corresponding
37 document summaries.
38
39 Example Queries
40 ---------------
41
42 Search against protein:
43
44 +----------------------+--------------------------------------+
45 | Parameter | Value |
46 +======================+======================================+
47 | NCBI Database to Use | Protein |
48 +----------------------+--------------------------------------+
49 | ID List | 28800982 28628843 |
50 +----------------------+--------------------------------------+
51
52 @REFERENCES@
53
54 @DISCLAIMER@
55 ]]></help>
56 <expand macro="citations"/>
57 </tool>