Mercurial > repos > iuc > nextclade
comparison test-data/genemap.gff3 @ 17:07ab9bd68a02 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
| author | iuc |
|---|---|
| date | Thu, 04 Aug 2022 06:58:48 +0000 |
| parents | |
| children |
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| 16:9e10ba792be2 | 17:07ab9bd68a02 |
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| 1 # Gene map (genome annotation) of SARS-CoV-2 in GFF format. | |
| 2 # For gene map purpses we only need some of the columns. We substitute unused values with "." as per GFF spec. | |
| 3 # See GFF format reference at https://www.ensembl.org/info/website/upload/gff.html | |
| 4 # seqname source feature start end score strand frame attribute | |
| 5 . . gene 26245 26472 . + . gene_name=E | |
| 6 . . gene 26523 27191 . + . gene_name=M | |
| 7 . . gene 28274 29533 . + . gene_name=N | |
| 8 . . gene 266 13468 . + . gene_name=ORF1a | |
| 9 . . gene 13468 21555 . + . gene_name=ORF1b | |
| 10 . . gene 25393 26220 . + . gene_name=ORF3a | |
| 11 . . gene 27202 27387 . + . gene_name=ORF6 | |
| 12 . . gene 27394 27759 . + . gene_name=ORF7a | |
| 13 . . gene 27756 27887 . + . gene_name=ORF7b | |
| 14 . . gene 27894 28259 . + . gene_name=ORF8 | |
| 15 . . gene 28284 28577 . + . gene_name=ORF9b | |
| 16 . . gene 29558 29674 . + . gene_name=ORF10 | |
| 17 . . gene 21563 25384 . + . gene_name=S |