Mercurial > repos > iuc > package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee

annotate tool_dependencies.xml @ 0:bed1ab604b55 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 14:58:22 -0400
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bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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1 <tool_dependency>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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2 <package name="Fido" version="f63cd47b8414f87d57b8c1b713d34a04b29c7aee">
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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3 <install version="1.0">
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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4 <actions>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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5 <action type="shell_command">git clone --recursive https://github.com/hendrikweisser/Fido.git</action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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6 <action type="shell_command">git reset --hard f63cd47b8414f87d57b8c1b713d34a04b29c7aee</action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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7 <action type="make_directory">build</action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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8 <action type="change_directory">build</action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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9 <action type="shell_command">cmake ..</action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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10 <action type="shell_command">make</action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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11 <action type="move_file">
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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12 <source>Fido</source>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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13 <destination>$INSTALL_DIR/bin</destination>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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14 </action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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15 <action type="move_file">
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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16 <source>FidoChooseParameters</source>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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17 <destination>$INSTALL_DIR/bin</destination>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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18 </action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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19 <action type="set_environment">
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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20 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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21 <environment_variable name="FIDO_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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22 </action>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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23 </actions>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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24 </install>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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25 <readme>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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26 Fido is a free software tool used in the area of computational proteomics. It calculates posterior probabilities for protein
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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27 identifications based on database searches of tandem mass spectra. The website for Fido is here: http://noble.gs.washington.edu/proj/fido/
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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28 </readme>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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29 </package>
bed1ab604b55 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fido_f63cd47b8414f87d57b8c1b713d34a04b29c7aee commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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30 </tool_dependency>