Mercurial > repos > iuc > package_jbrowse_1_12_0

annotate tool_dependencies.xml @ 4:d65f12198038 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit ed7d2d0cc18c6279123a6d7a268b4258061b0a30
author iuc
date Fri, 03 Jun 2016 09:58:30 -0400
parents 0af6238ca362
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
2 <tool_dependency>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
3 <package name="perl" version="5.18.1">
1
c36947f2b72b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 4dc932dcd9123cea93ac9afd3ea743fa21f390b7
iuc
parents: 0
diff changeset
4 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
0
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
5 </package>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
6 <package name="bundle_jbrowse" version="1.12.0">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
7 <repository changeset_revision="52153ec17769" name="package_perl_bundle_jbrowse_1_12_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
8 </package>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
9 <package name="jbrowse" version="1.12.0">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
10 <install version="1.0">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
11 <actions>
2
6bd1c6726087 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit c911cab0e018c006edcd888743e9d4b516ac41c9
iuc
parents: 1
diff changeset
12 <action sha256sum="a8bb2a56f1ca0470df2d072811db1f90fd6756feed92d8656eba1e6f67f438d3" type="download_by_url">http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=101&amp;fmt=.zip</action>
4
d65f12198038 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit ed7d2d0cc18c6279123a6d7a268b4258061b0a30
iuc
parents: 3
diff changeset
13 <action sha256sum="84dfdc81c8cae61ee61e03fe6be1b9d76813d933c268609a2c24dc85349b5840" type="download_by_url">https://gist.github.com/erasche/9cf020138d787eb47891/raw/e6ac8852be51c4869bd10d1977d2f68c731ffbc1/dojo.js.patch</action>
d65f12198038 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit ed7d2d0cc18c6279123a6d7a268b4258061b0a30
iuc
parents: 3
diff changeset
14 <action type="shell_command">patch -p1 &lt;../dojo.js.patch</action>
0
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
15 <action type="change_directory">..</action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
16 <action type="move_directory_files">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
17 <source_directory>JBrowse-1.12.0</source_directory>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
18 <destination_directory>$INSTALL_DIR/JBrowse-1.12.0</destination_directory>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
19 </action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
20 <action type="set_environment">
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
21 <environment_variable action="set_to" name="JBROWSE_SOURCE_DIR">$INSTALL_DIR/JBrowse-1.12.0</environment_variable>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
22 </action>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
23 </actions>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
24 </install>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
25 <readme>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
26 Copy of the JBrowse 1.12.0 source code, with dependencies
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
27 </readme>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
28 </package>
22be3ae5599d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_jbrowse_1_12_0 commit 2249d643284ee782d882cd200729a86a2c6bb744
iuc
parents:
diff changeset
29 </tool_dependency>