Mercurial > repos > iuc > package_ncbi_vdb_2_6_2

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
author iuc
date Tue, 17 May 2016 14:14:01 -0400
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be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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1 <?xml version="1.0"?>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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2 <tool_dependency>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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3 <package name="perl" version="5.18.1">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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4 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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5 </package>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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6 <package name="libxml2" version="2.9.3">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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7 <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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8 </package>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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9 <package name="ngs_sdk" version="1.2.3">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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10 <repository changeset_revision="3da0f4d34e92" name="package_ngs_sdk_1_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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11 </package>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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12 <package name="libmagic" version="5.25">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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13 <repository changeset_revision="21b08f55a6ac" name="package_libmagic_5_25" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
iuc
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14 </package>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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15 <package name="ncbi_vdb" version="2.6.2">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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16 <install version="1.0">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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17 <actions>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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18 <action sha256sum="c310edacd1a4f98a5cfab702f3eede98977ef64831f002fddd7728ed7e2034f4" target_filename="ncbi-vdb-2.6.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.6.2.tar.gz</action>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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19 <action type="set_environment_for_install">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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20 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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21 <package name="perl" version="5.18.1" />
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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22 </repository>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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23 <repository changeset_revision="24131daaf69f" name="package_libxml2_2_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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24 <package name="libxml2" version="2.9.3" />
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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25 </repository>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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26 <repository changeset_revision="3da0f4d34e92" name="package_ngs_sdk_1_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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27 <package name="ngs_sdk" version="1.2.3" />
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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28 </repository>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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29 <repository changeset_revision="21b08f55a6ac" name="package_libmagic_5_25" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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30 <package name="libmagic" version="5.25" />
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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31 </repository>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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32 </action>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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33 <action type="autoconf">--prefix=$INSTALL_DIR --with-ngs-sdk-prefix=$NGS_SDK_DIR --with-xml2-prefix=$LIBXML2_ROOT_DIR --build=$INSTALL_DIR</action>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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34 <action type="move_directory_files">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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35 <source_directory>.</source_directory>
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36 <destination_directory>$INSTALL_DIR/</destination_directory>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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37 </action>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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38 <action type="set_environment">
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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39 <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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40 </action>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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41 </actions>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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42 </install>
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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43 <readme>
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44 ncbi-vdb, required for sra-tools package.
be38d36c735d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_6_2 commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
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45 </readme>
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46 </package>
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47 </tool_dependency>