Mercurial > repos > iuc > package_numpy_1_9

comparison tool_dependencies.xml @ 3:9cc1138e5e3e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
author iuc
date Fri, 02 Oct 2015 09:10:47 -0400
parents d6f39c80e75b
children c8f7a7d73466
comparison
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2:d6f39c80e75b 3:9cc1138e5e3e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="atlas" version="3.10.2"> 3 <package name="atlas" version="3.10.2">
4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="python" version="2.7"> 6 <package name="numpy" version="1.9">
7 <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <install version="1.0">
8 </package> 8 <actions>
9 <package name="numpy" version="1.9"> 9 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5#510cee1c6a131e0a9eb759aa2cc62609</action>
10 <install version="1.0"> 10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
11 <actions> 11 <action type="set_environment_for_install">
12 <action type="set_environment_for_install"> 12 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
13 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 13 <package name="atlas" version="3.10.2" />
14 <package name="atlas" version="3.10.2" /> 14 </repository>
15 </repository> 15 </action>
16 </action> 16 <action type="shell_command">
17 <action type="setup_python_environment"> 17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
18 <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 18 export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
19 <package name="python" version="2.7" /> 19 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
20 </repository> 20 </action>
21 <!-- allow downloading and installing an Python package from https://pypi.org/ --> 21 <action type="set_environment">
22 <package>https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz#md5#78842b73560ec378142665e712ae4ad9</package> 22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
23 </action> 23 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
24 <action type="set_environment"> 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
25 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 25 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
26 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 26 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable>
27 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable> 27 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
28 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable> 28 </action>
29 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable> 29 </actions>
30 <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable> 30 </install>
31 </action> 31 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
32 </actions> 32 </package>
33 </install>
34 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
35 </package>
36 </tool_dependency> 33 </tool_dependency>