Mercurial > repos > iuc > package_numpy_1_9

annotate tool_dependencies.xml @ 3:9cc1138e5e3e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
author iuc
date Fri, 02 Oct 2015 09:10:47 -0400
parents d6f39c80e75b
children c8f7a7d73466
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1 <?xml version="1.0"?>
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2 <tool_dependency>
3
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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3 <package name="atlas" version="3.10.2">
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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5 </package>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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6 <package name="numpy" version="1.9">
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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7 <install version="1.0">
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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8 <actions>
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9 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5#510cee1c6a131e0a9eb759aa2cc62609</action>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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11 <action type="set_environment_for_install">
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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12 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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13 <package name="atlas" version="3.10.2" />
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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14 </repository>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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15 </action>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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16 <action type="shell_command">
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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18 export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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19 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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20 </action>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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21 <action type="set_environment">
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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23 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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25 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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26 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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27 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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28 </action>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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29 </actions>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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30 </install>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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31 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
9cc1138e5e3e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 26e1a6c62f83e82c02f2cdc10180090181ec0374-dirty
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32 </package>
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33 </tool_dependency>