changeset 0:be87f48b0104 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit 30d4cb2e85b56355004ad2a0a068787d72796a8e
author iuc
date Mon, 22 Jun 2015 11:48:20 -0400
parents
children 8adfe232049d
files tool_dependencies.xml
diffstat 1 files changed, 45 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jun 22 11:48:20 2015 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="python" version="2.7">
+        <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bcbiogff" version="0.6.2">
+        <install version="1.0">
+            <actions>
+                <action type="setup_python_environment">
+                    <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="python" version="2.7" />
+                    </repository>
+                    <package>https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz#md5=476881ef4012262dfc8adc645ee786c4</package>
+                    <package>https://pypi.python.org/packages/source/b/bcbio-gff/bcbio-gff-0.6.2.tar.gz#md5=d5aae8b125cdad4291f15bec20cfb0ef</package>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+bcbio-gff
+---------
+
+A python library to read and write Generic Feature Format (`GFF`_).
+See the `wiki documentation`_ for details on usage. The goal is to
+integrate this code in `gffutils`_ and `Biopython`_.
+
+Installation from `bcbio-gff in pypi`_::
+
+  pip install bcbio-gff
+
+This code is freely available for use under the `Biopython license &lt;https://github.com/biopython/biopython/blob/master/LICENSE&gt;`_.
+
+.. _GFF: http://www.sequenceontology.org/gff3.shtml
+.. _wiki documentation: http://biopython.org/wiki/GFF_Parsing
+.. _gffutils: https://github.com/daler/gffutils
+.. _Biopython: http://biopython.org
+.. _bcbio-gff in pypi: https://pypi.python.org/pypi/bcbio-gff
+
+
+        </readme>
+    </package>
+</tool_dependency>