Mercurial > repos > iuc > package_python_2_7_bcbiogff_0_6_2
changeset 0:be87f48b0104 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit 30d4cb2e85b56355004ad2a0a068787d72796a8e
| author | iuc |
|---|---|
| date | Mon, 22 Jun 2015 11:48:20 -0400 |
| parents | |
| children | 8adfe232049d |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 45 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jun 22 11:48:20 2015 -0400 @@ -0,0 +1,45 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="python" version="2.7"> + <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="bcbiogff" version="0.6.2"> + <install version="1.0"> + <actions> + <action type="setup_python_environment"> + <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="python" version="2.7" /> + </repository> + <package>https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz#md5=476881ef4012262dfc8adc645ee786c4</package> + <package>https://pypi.python.org/packages/source/b/bcbio-gff/bcbio-gff-0.6.2.tar.gz#md5=d5aae8b125cdad4291f15bec20cfb0ef</package> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +bcbio-gff +--------- + +A python library to read and write Generic Feature Format (`GFF`_). +See the `wiki documentation`_ for details on usage. The goal is to +integrate this code in `gffutils`_ and `Biopython`_. + +Installation from `bcbio-gff in pypi`_:: + + pip install bcbio-gff + +This code is freely available for use under the `Biopython license <https://github.com/biopython/biopython/blob/master/LICENSE>`_. + +.. _GFF: http://www.sequenceontology.org/gff3.shtml +.. _wiki documentation: http://biopython.org/wiki/GFF_Parsing +.. _gffutils: https://github.com/daler/gffutils +.. _Biopython: http://biopython.org +.. _bcbio-gff in pypi: https://pypi.python.org/pypi/bcbio-gff + + + </readme> + </package> +</tool_dependency>