Mercurial > repos > iuc > package_python_2_7_deeptools_1_5_11

annotate tool_dependencies.xml @ 2:cad615e7e064 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa
author iuc
date Wed, 02 Dec 2015 17:36:55 -0500
parents 01eb49da8dcf
children
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315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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1 <?xml version="1.0"?>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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2 <tool_dependency>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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3 <package name="samtools" version="0.1.19">
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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4 <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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5 </package>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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6 <package name="numpy" version="1.9">
2
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7 <repository changeset_revision="c1e72cd24a9c" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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8 </package>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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9 <package name="matplotlib" version="1.4">
2
cad615e7e064 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa
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10 <repository changeset_revision="a1bcd2e26387" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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11 </package>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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12 <package name="scipy" version="0.14">
2
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13 <repository changeset_revision="4d50eedb08bc" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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14 </package>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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15 <package name="pysam" version="0.8.3">
2
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16 <repository changeset_revision="bd27320c17eb" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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17 </package>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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18 <package name="bx-python" version="0.7.2">
2
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19 <repository changeset_revision="90300dffb802" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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20 </package>
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21 <package name="ucsc_tools" version="312">
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22 <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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23 </package>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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24 <package name="python" version="2.7.10">
2
cad615e7e064 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit e0f819a2fd56eb5ee30a7fd772780693e1f085fa
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25 <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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26 </package>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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27 <package name="deepTools" version="1.5.11">
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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28 <install version="1.0">
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29 <actions>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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30 <action type="setup_python_environment">
2
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31 <repository changeset_revision="80931fb5f433" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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32 <package name="python" version="2.7.10" />
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33 </repository>
2
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34 <repository changeset_revision="bd27320c17eb" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
0
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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35 <package name="pysam" version="0.8.3" />
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36 </repository>
2
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37 <repository changeset_revision="c1e72cd24a9c" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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38 <package name="numpy" version="1.9" />
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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39 </repository>
2
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40 <repository changeset_revision="a1bcd2e26387" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
0
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41 <package name="matplotlib" version="1.4" />
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42 </repository>
2
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43 <repository changeset_revision="4d50eedb08bc" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
0
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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44 <package name="scipy" version="0.14" />
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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45 </repository>
2
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46 <repository changeset_revision="90300dffb802" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
1
01eb49da8dcf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit b506753c5a6c755d070d36eab553e79692b2f232
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47 <package name="bx-python" version="0.7.2" />
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48 </repository>
0
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49 <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu">
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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50 <package name="samtools" version="0.1.19" />
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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51 </repository>
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52 <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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53 <package name="ucsc_tools" version="312" />
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54 </repository>
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55 <package>https://github.com/fidelram/deepTools/archive/1.5.11.tar.gz</package>
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56 </action>
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58 <action type="set_environment">
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59 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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60 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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61 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
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62 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
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63 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
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64 <!-- libpng lib path -->
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65 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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66 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
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67 <!-- disable the config file of deepTools -->
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68 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
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69 </action>
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70 </actions>
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71 </install>
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72 <readme>
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73 Installation of deepTools from Fidel Ramirez.
315b83e21eea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit d094788c200e3ecf24f2a429000c888e82131ed1
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74 https://github.com/fidelram/deepTools
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75 </readme>
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76 </package>
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77 </tool_dependency>