Mercurial > repos > iuc > package_python_2_7_scikit_learn_0_15

annotate tool_dependencies.xml @ 0:b82a778f2b93 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
author iuc
date Fri, 17 Jul 2015 14:30:04 -0400
parents
children cbc6b6eb2ce6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
2 <tool_dependency>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
3 <package name="python" version="2.7">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
4 <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
5 </package>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
6 <package name="numpy" version="1.9">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
7 <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
8 </package>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
9 <package name="scipy" version="0.14">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
10 <repository changeset_revision="f9a80a69d278" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
11 </package>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
12 <package name="matplotlib" version="1.4">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
13 <repository changeset_revision="8f39fc9cadb1" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
14 </package>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
15 <package name="scikit_learn" version="0.15">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
16 <install version="1.0">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
17 <actions>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
18 <action type="setup_python_environment">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
19 <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
20 <package name="python" version="2.7" />
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
21 </repository>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
22 <repository changeset_revision="b4b823ad5f0f" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
23 <package name="numpy" version="1.9" />
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
24 </repository>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
25 <repository changeset_revision="f9a80a69d278" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
26 <package name="scipy" version="0.14" />
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
27 </repository>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
28 <repository changeset_revision="8f39fc9cadb1" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
29 <package name="matplotlib" version="1.4" />
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
30 </repository>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
31 <!-- allow downloading and installing an Python package from https://pypi.org/ -->
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
32 <package>https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5#d9822ad0238e17b382a3c756ea94fe0d</package>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
33 </action>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
34
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
35 <action type="set_environment">
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
36 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
37 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
38 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
39 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
40 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
41 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
42 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
43 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR</environment_variable>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
44 </action>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
45 </actions>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
46 </install>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
47 <readme>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
48 Compiling scikit-learn requires a C compiler (typically gcc).
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
49 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
50
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
51 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
52 </readme>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
53 </package>
b82a778f2b93 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_scikit_learn_0_15 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
iuc
parents:
diff changeset
54 </tool_dependency>