Mercurial > repos > iuc > package_rpy2_2_3_6

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit dfaab7cbfdee82c9fe4ff34ce02b42fc456b9db9-dirty
author iuc
date Sun, 13 Dec 2015 15:30:42 -0500
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218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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1 <?xml version="1.0"?>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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2 <tool_dependency>
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3 <package name="R" version="3.2.1">
5bd646006a15 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit dfaab7cbfdee82c9fe4ff34ce02b42fc456b9db9-dirty
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4 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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5 </package>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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6 <package name="readline" version="6.2">
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b95be27b8ebf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit dfaab7cbfdee82c9fe4ff34ce02b42fc456b9db9
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7 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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8 </package>
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9 <package name="rpy2" version="2.3.6">
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218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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10 <install version="1.0">
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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11 <actions>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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12 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.3.6.tar.gz</action>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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13 <action type="set_environment_for_install">
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b95be27b8ebf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit dfaab7cbfdee82c9fe4ff34ce02b42fc456b9db9
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14 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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15 <package name="readline" version="6.2" />
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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16 </repository>
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17 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
5bd646006a15 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit dfaab7cbfdee82c9fe4ff34ce02b42fc456b9db9-dirty
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18 <package name="R" version="3.2.1" />
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218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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19 </repository>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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20 </action>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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21
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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22 <action type="shell_command">
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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24 export LDFLAGS="-L$READLINE_LIB_PATH -lreadline" &amp;&amp;
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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25 export CPPFLAGS="-I$READLINE_INCLUDE_PATH" &amp;&amp;
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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26 python setup.py build --r-home $R_HOME --r-home-lib $R_HOME/lib install --install-lib $INSTALL_DIR/lib/python
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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27 </action>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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28 <action type="set_environment">
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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29 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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30 </action>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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31 </actions>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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32 </install>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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33 <readme>rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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34 http://rpy.sourceforge.net/rpy2.html
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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35 </readme>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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36 </package>
218c5b67206d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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37 </tool_dependency>