Mercurial > repos > iuc > package_snpeff_4_0

changeset 1:792d8f4485fb draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_snpeff_4_0 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 11:14:52 -0400
parents 6bc55957927b
children
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jan 22 07:50:39 2015 -0500
+++ b/tool_dependencies.xml	Fri Jul 17 11:14:52 2015 -0400
@@ -8,7 +8,7 @@
                     <source_directory>.</source_directory>
                     <destination_directory>$INSTALL_DIR</destination_directory>
                 </action>
-                <action type="shell_command">sed -i.orig 's;http://downloads.sourceforge.net/project/snpeff/databases;https://snpeff-data.galaxyproject.org/databases;g' $INSTALL_DIR/snpEff.config</action>
+                <action type="shell_command">sed -i.orig -e 's;http://downloads.sourceforge.net/project/snpeff/databases;https://snpeff-data.galaxyproject.org/databases;g' $INSTALL_DIR/snpEff.config</action>
                 <action type="set_environment">
                     <environment_variable name="SNPEFF_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>