<?xml version="1.0"?>
<tool_dependency>
    <package name="vt" version="5c735ab14b5603d9f14da6ee0e63d86ba3779934">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone --recursive https://github.com/atks/vt.git</action>
                <action type="shell_command">git reset --hard 5c735ab14b5603d9f14da6ee0e63d86ba3779934</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>vt</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="VT_ROOT_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
            http://genome.sph.umich.edu/wiki/Vt
            https://github.com/atks/vt
        </readme>
    </package>
</tool_dependency>