Mercurial > repos > iuc > pairtools_parse

annotate macros.xml @ 17:a5876cca7b05 draft default tip

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planemo upload for repository https://github.com/open2c/pairtools commit f60e7663dc3fd1a564e691ef35d35f35b0a851ad
author iuc
date Wed, 24 Sep 2025 11:50:40 +0000
parents 987ed7d8e152
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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1 <macros>
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963d674e438d planemo upload for repository https://github.com/open2c/pairtools commit dcee7286748c82b3f046d9a908bb9ef6365718cf
iuc
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2 <token name="@TOOL_VERSION@">1.1.3</token>
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a5876cca7b05 planemo upload for repository https://github.com/open2c/pairtools commit f60e7663dc3fd1a564e691ef35d35f35b0a851ad
iuc
parents: 16
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3 <token name="@SUFFIX_VERSION@">6</token>
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bfb00f8fec97 planemo upload for repository https://github.com/open2c/pairtools commit 5997d890c2a3fedff3c66d858cb1629b28138dc0
iuc
parents: 12
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4 <token name="@PROFILE_VERSION@">25.0</token>
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68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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5 <xml name="edam_ontology">
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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6 <edam_datas>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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7 <edam_data>topic_1381</edam_data>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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8 </edam_datas>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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9 </xml>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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10 <xml name="requirements">
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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11 <requirements>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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12 <requirement type="package" version="@TOOL_VERSION@">pairtools</requirement>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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13 </requirements>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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14 </xml>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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15 <xml name="creator">
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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16 <creator>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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17 <organization name="IZW" url="https://www.izw-berlin.de/en/home.html"/>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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18 </creator>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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19 </xml>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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20 <xml name="citations">
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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21 <citations>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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22 <citation type="doi">10.1101/2023.02.13.528389</citation>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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23 </citations>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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24 </xml>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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25 <xml name="walks_policy_options">
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
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26 <option value="mask">mask - Mask walks (chrom="!", pos=0, strand="-")</option>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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27 <option value="5any">5any - Report the 5'-most alignment on each side</option>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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28 <option value="5unique" selected="true">5unique - Report the 5'-most unique alignment on each side, if present</option>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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29 <option value="3any">3any - Report the 3'-most alignment on each side</option>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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30 <option value="3unique">3unique - Report the 3'-most unique alignment on each side, if present</option>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
iuc
parents:
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31 <option value="all">all - Report all available unique alignments on each side</option>
68413c5eb035 planemo upload for repository https://github.com/open2c/pairtools commit ccfba0aea1bde83cd14ab0ffc312d96cf13e777f
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32 </xml>
14
bfb00f8fec97 planemo upload for repository https://github.com/open2c/pairtools commit 5997d890c2a3fedff3c66d858cb1629b28138dc0
iuc
parents: 12
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33 </macros>