view test-data/test_1/results_test1.txt @ 3:7075b7a5441b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 464661a59ed12a642d365f485a222764b55048a5
author iuc
date Thu, 02 Mar 2023 14:58:17 +0000
parents 2b6e795b22a9
children
line wrap: on
line source

plasmidfinder Results

Organism(s): Gram Positive

****************************************************************************************
Inc18
****************************************************************************************************************
Plasmid    Identity    Query / Template length    Contig        Position in contig    Note    Accession number
****************************************************************************************************************
-          -           -                          No hit found  -                     -       -
================================================================================================================

****************************************************************************************
Rep3
********************************************************************************************************************************************************************************************************************************
Plasmid      Identity  Query / Template length    Contig                                                                                                                    Position in contig    Note        Accession number
********************************************************************************************************************************************************************************************************************************
rep11a          99.89  945 / 945                  contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302  308..1252             repA(pB82)  AB178871
================================================================================================================================================================================================================================

****************************************************************************************
Rep_trans
**********************************************************************************************************************************************************************************************************************************
Plasmid      Identity  Query / Template length    Contig                                                                                                                     Position in contig    Note         Accession number
**********************************************************************************************************************************************************************************************************************************
rep14a           99.5  402 / 402                  contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302  1703..2104            ORF1(pKQ10)  EFU01917
==================================================================================================================================================================================================================================




Extended Output:

# rep11a_AB178871
template: 	ATGGCTAATGAGATTGTAAAATACCACCATGAATTAAATACAATTCCTTTAAGAAAATTT
          	|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
query:    	ATGGCTAATGAGATTGTAAAATACCACCATGAGTTAAATACAATTCCTTTAAGAAAATTT

template: 	ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT

template: 	AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA

template: 	AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT

template: 	GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA

template: 	ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT

template: 	TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA

template: 	AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA

template: 	TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT

template: 	GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA

template: 	CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT

template: 	ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA

template: 	GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA

template: 	ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA

template: 	CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA

template: 	GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG
          	|||||||||||||||||||||||||||||||||||||||||||||
query:    	GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG

# rep14a_EFU01917
template: 	GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA

template: 	ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT

template: 	GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA

template: 	AAACCTATTGATAAAATAGTTATTGAAGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA
          	|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
query:    	AAACCTATTGATAAAATAGTTATTGATGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA

template: 	ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT
          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
query:    	ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT

template: 	GAGTTAACGAACCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA
          	||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
query:    	GAGTTAACGAATCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA

template: 	TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA
          	||||||||||||||||||||||||||||||||||||||||||
query:    	TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA