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view test-data/test_1/results_test1.txt @ 0:2b6e795b22a9 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
| author | iuc |
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| date | Mon, 19 Sep 2022 08:47:42 +0000 |
| parents | |
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plasmidfinder Results Organism(s): Gram Positive **************************************************************************************** Inc18 **************************************************************************************************************** Plasmid Identity Query / Template length Contig Position in contig Note Accession number **************************************************************************************************************** - - - No hit found - - - ================================================================================================================ **************************************************************************************** Rep3 ******************************************************************************************************************************************************************************************************************************** Plasmid Identity Query / Template length Contig Position in contig Note Accession number ******************************************************************************************************************************************************************************************************************************** rep11a 99.89 945 / 945 contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302 308..1252 repA(pB82) AB178871 ================================================================================================================================================================================================================================ **************************************************************************************** Rep_trans ********************************************************************************************************************************************************************************************************************************** Plasmid Identity Query / Template length Contig Position in contig Note Accession number ********************************************************************************************************************************************************************************************************************************** rep14a 99.5 402 / 402 contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302 1703..2104 ORF1(pKQ10) EFU01917 ================================================================================================================================================================================================================================== Extended Output: # rep11a_AB178871 template: ATGGCTAATGAGATTGTAAAATACCACCATGAATTAAATACAATTCCTTTAAGAAAATTT |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| query: ATGGCTAATGAGATTGTAAAATACCACCATGAGTTAAATACAATTCCTTTAAGAAAATTT template: ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT template: AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA template: AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT template: GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA template: ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT template: TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA template: AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA template: TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT template: GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA template: CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT template: ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA template: GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA template: ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA template: CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA template: GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG ||||||||||||||||||||||||||||||||||||||||||||| query: GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG # rep14a_EFU01917 template: GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA template: ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT template: GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA template: AAACCTATTGATAAAATAGTTATTGAAGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| query: AAACCTATTGATAAAATAGTTATTGATGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA template: ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| query: ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT template: GAGTTAACGAACCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| query: GAGTTAACGAATCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA template: TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA |||||||||||||||||||||||||||||||||||||||||| query: TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA