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comparison test-data/test_1/results_test1.txt @ 0:2b6e795b22a9 draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
author iuc
date Mon, 19 Sep 2022 08:47:42 +0000
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-1:000000000000 0:2b6e795b22a9
1 plasmidfinder Results
2
3 Organism(s): Gram Positive
4
5 ****************************************************************************************
6 Inc18
7 ****************************************************************************************************************
8 Plasmid Identity Query / Template length Contig Position in contig Note Accession number
9 ****************************************************************************************************************
10 - - - No hit found - - -
11 ================================================================================================================
12
13 ****************************************************************************************
14 Rep3
15 ********************************************************************************************************************************************************************************************************************************
16 Plasmid Identity Query / Template length Contig Position in contig Note Accession number
17 ********************************************************************************************************************************************************************************************************************************
18 rep11a 99.89 945 / 945 contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302 308..1252 repA(pB82) AB178871
19 ================================================================================================================================================================================================================================
20
21 ****************************************************************************************
22 Rep_trans
23 **********************************************************************************************************************************************************************************************************************************
24 Plasmid Identity Query / Template length Contig Position in contig Note Accession number
25 **********************************************************************************************************************************************************************************************************************************
26 rep14a 99.5 402 / 402 contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302 1703..2104 ORF1(pKQ10) EFU01917
27 ==================================================================================================================================================================================================================================
28
29
30
31
32 Extended Output:
33
34 # rep11a_AB178871
35 template: ATGGCTAATGAGATTGTAAAATACCACCATGAATTAAATACAATTCCTTTAAGAAAATTT
36 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
37 query: ATGGCTAATGAGATTGTAAAATACCACCATGAGTTAAATACAATTCCTTTAAGAAAATTT
38
39 template: ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT
40 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
41 query: ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT
42
43 template: AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA
44 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
45 query: AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA
46
47 template: AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT
48 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
49 query: AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT
50
51 template: GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA
52 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
53 query: GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA
54
55 template: ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT
56 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
57 query: ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT
58
59 template: TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA
60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
61 query: TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA
62
63 template: AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA
64 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
65 query: AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA
66
67 template: TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT
68 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
69 query: TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT
70
71 template: GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA
72 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
73 query: GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA
74
75 template: CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT
76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
77 query: CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT
78
79 template: ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA
80 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
81 query: ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA
82
83 template: GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA
84 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
85 query: GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA
86
87 template: ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA
88 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
89 query: ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA
90
91 template: CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA
92 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
93 query: CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA
94
95 template: GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG
96 |||||||||||||||||||||||||||||||||||||||||||||
97 query: GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG
98
99 # rep14a_EFU01917
100 template: GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA
101 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
102 query: GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA
103
104 template: ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT
105 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
106 query: ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT
107
108 template: GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA
109 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
110 query: GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA
111
112 template: AAACCTATTGATAAAATAGTTATTGAAGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA
113 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
114 query: AAACCTATTGATAAAATAGTTATTGATGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA
115
116 template: ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT
117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
118 query: ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT
119
120 template: GAGTTAACGAACCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA
121 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
122 query: GAGTTAACGAATCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA
123
124 template: TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA
125 ||||||||||||||||||||||||||||||||||||||||||
126 query: TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA
127