Mercurial > repos > iuc > plasmidfinder

diff test-data/test_1/results_test1.txt @ 0:2b6e795b22a9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
author iuc
date Mon, 19 Sep 2022 08:47:42 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_1/results_test1.txt	Mon Sep 19 08:47:42 2022 +0000
@@ -0,0 +1,127 @@
+plasmidfinder Results
+
+Organism(s): Gram Positive
+
+****************************************************************************************
+Inc18
+****************************************************************************************************************
+Plasmid    Identity    Query / Template length    Contig        Position in contig    Note    Accession number
+****************************************************************************************************************
+-          -           -                          No hit found  -                     -       -
+================================================================================================================
+
+****************************************************************************************
+Rep3
+********************************************************************************************************************************************************************************************************************************
+Plasmid      Identity  Query / Template length    Contig                                                                                                                    Position in contig    Note        Accession number
+********************************************************************************************************************************************************************************************************************************
+rep11a          99.89  945 / 945                  contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302  308..1252             repA(pB82)  AB178871
+================================================================================================================================================================================================================================
+
+****************************************************************************************
+Rep_trans
+**********************************************************************************************************************************************************************************************************************************
+Plasmid      Identity  Query / Template length    Contig                                                                                                                     Position in contig    Note         Accession number
+**********************************************************************************************************************************************************************************************************************************
+rep14a           99.5  402 / 402                  contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302  1703..2104            ORF1(pKQ10)  EFU01917
+==================================================================================================================================================================================================================================
+
+
+
+
+Extended Output:
+
+# rep11a_AB178871
+template: 	ATGGCTAATGAGATTGTAAAATACCACCATGAATTAAATACAATTCCTTTAAGAAAATTT
+          	|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
+query:    	ATGGCTAATGAGATTGTAAAATACCACCATGAGTTAAATACAATTCCTTTAAGAAAATTT
+
+template: 	ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT
+
+template: 	AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA
+
+template: 	AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT
+
+template: 	GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA
+
+template: 	ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT
+
+template: 	TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA
+
+template: 	AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA
+
+template: 	TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT
+
+template: 	GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA
+
+template: 	CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT
+
+template: 	ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA
+
+template: 	GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA
+
+template: 	ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA
+
+template: 	CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA
+
+template: 	GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG
+          	|||||||||||||||||||||||||||||||||||||||||||||
+query:    	GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG
+
+# rep14a_EFU01917
+template: 	GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA
+
+template: 	ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT
+
+template: 	GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA
+
+template: 	AAACCTATTGATAAAATAGTTATTGAAGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA
+          	|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
+query:    	AAACCTATTGATAAAATAGTTATTGATGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA
+
+template: 	ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT
+          	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT
+
+template: 	GAGTTAACGAACCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA
+          	||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
+query:    	GAGTTAACGAATCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA
+
+template: 	TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA
+          	||||||||||||||||||||||||||||||||||||||||||
+query:    	TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA
+