Mercurial > repos > iuc > plink
view test-data/plink_log.txt @ 0:a98caf1d69ab draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 555a851b363c015f26d6fcf1f52bcbf3420a0b3b"
author | iuc |
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date | Mon, 21 Sep 2020 10:09:22 +0000 |
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PLINK v1.90p 64-bit (16 Jun 2020) Options in effect: --bfile plink_input/plink_input --indep-pairwise 50 5 0.2 --make-bed --out plink_output/plink_output Hostname: p-body.local Working directory: /private/var/folders/f7/p887fr2x6hd_jg712040rl580000gn/T/tmpzq_so7fd/job_working_directory/000/90/working Start time: Tue Sep 15 12:47:24 2020 Random number seed: 1600199244 32768 MB RAM detected; reserving 16384 MB for main workspace. 50 variants loaded from .bim file. 200 people (0 males, 200 females) loaded from .fam. 200 phenotype values loaded from .fam. Using 1 thread (no multithreaded calculations invoked). Before main variant filters, 200 founders and 0 nonfounders present. Calculating allele frequencies... done. 50 variants and 200 people pass filters and QC. Among remaining phenotypes, 101 are cases and 99 are controls. --make-bed to plink_output/plink_output.bed + plink_output/plink_output.bim + plink_output/plink_output.fam ... done. Pruned 0 variants from chromosome 1, leaving 50. Pruning complete. 0 of 50 variants removed. Marker lists written to plink_output/plink_output.prune.in and plink_output/plink_output.prune.out . End time: Tue Sep 15 12:47:24 2020