Mercurial > repos > iuc > samtools_coverage

annotate test-data/results_2.txt @ 2:8a477224dfee draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
author iuc
date Wed, 31 May 2023 17:15:17 +0000
parents 90f2dd176d80
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
diff changeset
1 insert (599bp)
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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2 > 73.64% │ █ │ Number of reads: 2
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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3 > 65.45% │ █ │
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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4 > 57.27% │ █ │ Covered bases: 20bp
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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5 > 49.09% │ ▅ █ │ Percent covered: 3.339%
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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6 > 40.91% │ █ █ │ Mean coverage: 0.0334x
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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7 > 32.73% │ █▄ █ │ Mean baseQ: 32
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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8 > 24.55% │ ██ █ │ Mean mapQ: 30
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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9 > 16.36% │ ██ █ │
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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10 > 8.18% │ ██ █▁ │ Histo bin width: 11bp
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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11 > 0.00% │ ██ ██ │ Histo max bin: 81.818%
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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12 1 110 220 330 440 599
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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13
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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14 ref1 (45bp)
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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15 > 90.00% │ ████████████████ █████ ██████████│ Number of reads: 6
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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16 > 80.00% │ ████████████████ █████ ██████████│
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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17 > 70.00% │ ████████████████ █████ ██████████│ Covered bases: 31bp
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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18 > 60.00% │ ████████████████ █████ ██████████│ Percent covered: 68.89%
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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19 > 50.00% │ ████████████████ █████ ██████████│ Mean coverage: 1.24x
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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20 > 40.00% │ ████████████████ █████ ██████████│ Mean baseQ: 255
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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21 > 30.00% │ ████████████████ █████ ██████████│ Mean mapQ: 30
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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22 > 20.00% │ ████████████████ █████ ██████████│
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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23 > 10.00% │ ████████████████ █████ ██████████│ Histo bin width: 1bp
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
parents: 0
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24 > 0.00% │ ████████████████ █████ ██████████│ Histo max bin: 100%
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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25 1 10 20 30 45
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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26
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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27 ref2 (40bp)
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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28 > 90.00% │████████████████████████████████████ │ Number of reads: 6
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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29 > 80.00% │████████████████████████████████████ │
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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30 > 70.00% │████████████████████████████████████ │ Covered bases: 36bp
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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31 > 60.00% │████████████████████████████████████ │ Percent covered: 90%
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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32 > 50.00% │████████████████████████████████████ │ Mean coverage: 3.38x
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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33 > 40.00% │████████████████████████████████████ │ Mean baseQ: 63.3
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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34 > 30.00% │████████████████████████████████████ │ Mean mapQ: 30
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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35 > 20.00% │████████████████████████████████████ │
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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36 > 10.00% │████████████████████████████████████ │ Histo bin width: 1bp
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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37 > 0.00% │████████████████████████████████████ │ Histo max bin: 100%
8a477224dfee planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit 3a5a4ad75547c6c27430d85e6ddf3c2ff1ece0ba
iuc
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38 1 10 20 30 40