Mercurial > repos > iuc > seqtk

annotate seqtk_randbase.xml @ 5:a09586d5149a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 83ecfe7d9bbf03c91f27ba18776352a1ebf8cf6f
author iuc
date Fri, 11 Jan 2019 05:15:20 -0500
parents ecf1c30da3a2
children 3da72230c066
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
5
a09586d5149a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 83ecfe7d9bbf03c91f27ba18776352a1ebf8cf6f
iuc
parents: 4
diff changeset
2 <tool id="seqtk_randbase" name="seqtk_randbase" version="@TOOL_VERSION@.1">
3
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
3 <description>choose a random base from hets</description>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
4 <macros>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
5 <import>macros.xml</import>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
6 </macros>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
7 <expand macro="requirements"/>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
8 <expand macro="stdio"/>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
9 <command><![CDATA[
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
10 seqtk randbase
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
11 '$in_file'
4
ecf1c30da3a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
iuc
parents: 3
diff changeset
12 @CONDITIONAL_GZIP_OUT@
3
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
13 ]]></command>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
14 <inputs>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
15 <expand macro="in_faq"/>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
16 </inputs>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
17 <outputs>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
18 <data name="default" format_source="in_file" label="Unambiguous $in_file.name"/>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
19 </outputs>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
20 <tests>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
21 <test>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
22 <param name="in_file" value="seqtk_randbase.fa"/>
4
ecf1c30da3a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
iuc
parents: 3
diff changeset
23 <output name="default" file="seqtk_randbase.out" ftype="fasta" compare="sim_size"/>
ecf1c30da3a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
iuc
parents: 3
diff changeset
24 </test>
ecf1c30da3a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
iuc
parents: 3
diff changeset
25 <test>
ecf1c30da3a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
iuc
parents: 3
diff changeset
26 <param name="in_file" value="seqtk_randbase.fa.gz" ftype="fasta.gz"/>
ecf1c30da3a2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit ad43df79dca3dc7c3511c6eb2ccf8589d2804eb2
iuc
parents: 3
diff changeset
27 <output name="default" file="seqtk_randbase.out.gz" ftype="fasta.gz" compare="sim_size"/>
3
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
28 </test>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
29 </tests>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
30 <help><![CDATA[
0
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
31 **What it does**
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
32
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
33 Randomly resolves ambiguous bases
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
34
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
35 ::
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
36
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
37 # Input fasta
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
38 >ambig
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
39 ACGTMRWSYK
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
40
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
41 results in
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
42
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
43 ::
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
44
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
45 # Output result
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
46 >ambig
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
47 ACGTCGTGTT
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
48
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
49 @ATTRIBUTION@
3
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
50 ]]></help>
bc7d99f46a5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 7379d9f8823d3c639c8119b116e141d0a736ca1d
iuc
parents: 2
diff changeset
51 <expand macro="citation" />
0
e0a0fd938de4 Uploaded
iuc
parents:
diff changeset
52 </tool>