Mercurial > repos > iuc > tbvcfreport

comparison test-data/rif_resistant_drug_resistance_report.html @ 0:02d81b994ef5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f337505deb06b66961f77a64bfae244f88c6a865"
author iuc
date Thu, 29 Aug 2019 08:18:59 -0400
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1 <!DOCTYPE html>
2 <html>
3
4 <head>
5 <title></title>
6 <meta charset="utf-8">
7 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
8 <link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet"
9 integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
10 <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.19/css/dataTables.bootstrap4.min.css">
11 <link rel="stylesheet" type="text/css"
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13 <link rel="stylesheet" type="text/css"
14 href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.dataTables.min.css">
15 </head>
16
17 <body>
18 <div class="container">
19 <div class="row">
20 <h2 class="mt-5">
21 rif_resistant Report
22 </h2>
23 </div>
24 <div class="row">
25 <table class="table table-striped table-hover">
26 <caption>Lineage Info</caption>
27 <thead class="thead-light">
28 <tr>
29 <th scope="col">Species</th>
30 <th scope="col">Lineage</th>
31 <th scope="col">Sub-lineage</th>
32 <th scope="col">Agreement with SNPs from this lineage</th>
33 </tr>
34 </thead>
35 <tbody>
36 <tr>
37 <td>M. tuberculosis</td>
38 <td>Lineage 4</td>
39 <td>
40 Not Available
41 </td>
42 <td>99%</td>
43 </tr>
44 </tbody>
45 </table>
46 </div>
47 <hr>
48 <div class="row">
49 <h3 class="mb-2">
50 <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank"
51 rel="noreferrer noopener">TBProfiler</a>
52 Drug Resistance Report
53 </h3>
54 </div>
55 <div class="row">
56 <table id="drug_resistance" class="table table-hover table-bordered table-striped table-sm" cellspacing="0">
57 <caption class="mb-3 text-info">
58 <strong>Disclaimer</strong>:
59 Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by
60 <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank"
61 rel="noreferrer noopener">TBProfiler</a>.
62 </caption>
63 <thead class="thead-light">
64 <tr>
65 <th scope="col">Drug</th>
66 <th scope="col">Resistance</th>
67 <th scope="col">Supporting Mutations</th>
68 </tr>
69 </thead>
70 <tr>
71 <td>Isoniazid</td>
72 <td>S</td>
73 <td></td>
74 </tr>
75 <tr>
76 <td>Rifampicin</td>
77 <td>R</td>
78 <td> <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB"
79 rel="noreferrer noopener">rpoB</a>
80 (1.0 p.Asp435Val)
81 </td>
82 </tr>
83 <tr>
84 <td>Ethambutol</td>
85 <td>S</td>
86 <td></td>
87 </tr>
88 <tr>
89 <td>Pyrazinamide</td>
90 <td>S</td>
91 <td></td>
92 </tr>
93 <tr>
94 <td>Streptomycin</td>
95 <td>S</td>
96 <td></td>
97 </tr>
98 <tr>
99 <td>Ethionamide</td>
100 <td>S</td>
101 <td></td>
102 </tr>
103 <tr>
104 <td>Fluoroquinolones</td>
105 <td>S</td>
106 <td></td>
107 </tr>
108 <tr>
109 <td>Amikacin</td>
110 <td>S</td>
111 <td></td>
112 </tr>
113 <tr>
114 <td>Capreomycin</td>
115 <td>S</td>
116 <td></td>
117 </tr>
118 <tr>
119 <td>Kanamycin</td>
120 <td>S</td>
121 <td></td>
122 </tr>
123 <tr>
124 <td>Para-aminosalicylic acid</td>
125 <td>S</td>
126 <td></td>
127 </tr>
128 <tr>
129 <td>Linezolid</td>
130 <td>S</td>
131 <td></td>
132 </tr>
133 <tr>
134 <td>Cycloserine</td>
135 <td>S</td>
136 <td></td>
137 </tr>
138 <tr>
139 <td>Delaminid</td>
140 <td>S</td>
141 <td></td>
142 </tr>
143 <tr>
144 <td>Clofazimine</td>
145 <td>S</td>
146 <td></td>
147 </tr>
148 <tr>
149 <td>Bedaquiline</td>
150 <td>S</td>
151 <td></td>
152 </tr>
153 </table>
154 </div>
155 <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js"
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186 <script type="text/javascript" language="javascript" class="init">
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196 table.buttons().container().appendTo('#vcfreport_wrapper .col-md-6:eq(0)');
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198 </script>
199 </div>
200 </body>
201
202 </html>