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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f337505deb06b66961f77a64bfae244f88c6a865"
author iuc
date Thu, 29 Aug 2019 08:18:59 -0400
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            <h2 class="mt-5">
                rif_resistant Report
            </h2>
        </div>
                <div class="row">
            <table class="table table-striped table-hover">
                <caption>Lineage Info</caption>
                <thead class="thead-light">
                    <tr>
                        <th scope="col">Species</th>
                        <th scope="col">Lineage</th>
                        <th scope="col">Sub-lineage</th>
                        <th scope="col">Agreement with SNPs from this lineage</th>
                    </tr>
                </thead>
                <tbody>
                    <tr>
                        <td>M. tuberculosis</td>
                        <td>Lineage 4</td>
                        <td>
                                                        Not Available
                                                    </td>
                        <td>99%</td>
                    </tr>
                </tbody>
            </table>
        </div>
                        <hr>
        <div class="row">
    <h3 class="mb-2">
        <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank"
            rel="noreferrer noopener">TBProfiler</a>
        Drug Resistance Report
    </h3>
</div>
<div class="row">
    <table id="drug_resistance" class="table table-hover table-bordered table-striped table-sm" cellspacing="0">
        <caption class="mb-3 text-info">
            <strong>Disclaimer</strong>:
            Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by
            <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank"
                rel="noreferrer noopener">TBProfiler</a>.
        </caption>
        <thead class="thead-light">
            <tr>
                <th scope="col">Drug</th>
                <th scope="col">Resistance</th>
                <th scope="col">Supporting Mutations</th>
            </tr>
        </thead>
                <tr>
            <td>Isoniazid</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Rifampicin</td>
            <td>R</td>
            <td>                <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB"
                    rel="noreferrer noopener">rpoB</a>
                (1.0 p.Asp435Val)
                </td>
        </tr>
                <tr>
            <td>Ethambutol</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Pyrazinamide</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Streptomycin</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Ethionamide</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Fluoroquinolones</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Amikacin</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Capreomycin</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Kanamycin</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Para-aminosalicylic acid</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Linezolid</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Cycloserine</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Delaminid</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Clofazimine</td>
            <td>S</td>
            <td></td>
        </tr>
                <tr>
            <td>Bedaquiline</td>
            <td>S</td>
            <td></td>
        </tr>
            </table>
</div>
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