Mercurial > repos > iuc > tbvcfreport
diff test-data/rif_resistant_drug_resistance_report.html @ 0:02d81b994ef5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f337505deb06b66961f77a64bfae244f88c6a865"
| author | iuc |
|---|---|
| date | Thu, 29 Aug 2019 08:18:59 -0400 |
| parents | |
| children | adc0645b945c |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rif_resistant_drug_resistance_report.html Thu Aug 29 08:18:59 2019 -0400 @@ -0,0 +1,202 @@ +<!DOCTYPE html> +<html> + +<head> + <title></title> + <meta charset="utf-8"> + <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> + <link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet" + integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous"> + <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.19/css/dataTables.bootstrap4.min.css"> + <link rel="stylesheet" type="text/css" + href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.bootstrap4.min.css"> + <link rel="stylesheet" type="text/css" + href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.dataTables.min.css"> + </head> + +<body> + <div class="container"> + <div class="row"> + <h2 class="mt-5"> + rif_resistant Report + </h2> + </div> + <div class="row"> + <table class="table table-striped table-hover"> + <caption>Lineage Info</caption> + <thead class="thead-light"> + <tr> + <th scope="col">Species</th> + <th scope="col">Lineage</th> + <th scope="col">Sub-lineage</th> + <th scope="col">Agreement with SNPs from this lineage</th> + </tr> + </thead> + <tbody> + <tr> + <td>M. tuberculosis</td> + <td>Lineage 4</td> + <td> + Not Available + </td> + <td>99%</td> + </tr> + </tbody> + </table> + </div> + <hr> + <div class="row"> + <h3 class="mb-2"> + <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank" + rel="noreferrer noopener">TBProfiler</a> + Drug Resistance Report + </h3> +</div> +<div class="row"> + <table id="drug_resistance" class="table table-hover table-bordered table-striped table-sm" cellspacing="0"> + <caption class="mb-3 text-info"> + <strong>Disclaimer</strong>: + Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by + <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank" + rel="noreferrer noopener">TBProfiler</a>. + </caption> + <thead class="thead-light"> + <tr> + <th scope="col">Drug</th> + <th scope="col">Resistance</th> + <th scope="col">Supporting Mutations</th> + </tr> + </thead> + <tr> + <td>Isoniazid</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Rifampicin</td> + <td>R</td> + <td> <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB" + rel="noreferrer noopener">rpoB</a> + (1.0 p.Asp435Val) + </td> + </tr> + <tr> + <td>Ethambutol</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Pyrazinamide</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Streptomycin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Ethionamide</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Fluoroquinolones</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Amikacin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Capreomycin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Kanamycin</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Para-aminosalicylic acid</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Linezolid</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Cycloserine</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Delaminid</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Clofazimine</td> + <td>S</td> + <td></td> + </tr> + <tr> + <td>Bedaquiline</td> + <td>S</td> + <td></td> + </tr> + </table> +</div> + <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" + integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"> + </script> + <script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.3/umd/popper.min.js" + integrity="sha384-ZMP7rVo3mIykV+2+9J3UJ46jBk0WLaUAdn689aCwoqbBJiSnjAK/l8WvCWPIPm49" crossorigin="anonymous"> + </script> + <script src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/js/bootstrap.min.js" + integrity="sha384-ChfqqxuZUCnJSK3+MXmPNIyE6ZbWh2IMqE241rYiqJxyMiZ6OW/JmZQ5stwEULTy" crossorigin="anonymous"> + </script> + <script type="text/javascript" charset="utf8" + src="https://cdn.datatables.net/1.10.19/js/jquery.dataTables.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdn.datatables.net/1.10.19/js/dataTables.bootstrap4.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdn.datatables.net/buttons/1.5.2/js/dataTables.buttons.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.bootstrap4.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.flash.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdnjs.cloudflare.com/ajax/libs/jszip/3.1.3/jszip.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdnjs.cloudflare.com/ajax/libs/pdfmake/0.1.36/pdfmake.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdnjs.cloudflare.com/ajax/libs/pdfmake/0.1.36/vfs_fonts.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.html5.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.print.min.js"></script> + <script type="text/javascript" charset="utf8" + src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.colVis.min.js"></script> + <script type="text/javascript" language="javascript" class="init"> + $(function () { + var table = $('#vcfreport').DataTable({ + lengthChange: false, + buttons: [{ + extend: 'csv', + text: 'Download CSV', + filename: 'rif_resistant' + }] + }); + table.buttons().container().appendTo('#vcfreport_wrapper .col-md-6:eq(0)'); + }); + </script> + </div> +</body> + +</html> \ No newline at 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