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comparison test-data/vcf_with_no_protein_report.txt @ 3:42818629ec4c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
author iuc
date Fri, 31 May 2024 20:06:49 +0000
parents 4934c0ac6197
children
comparison
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2:4934c0ac6197 3:42818629ec4c
1 #Vcf_with_no_protein Report 1 #Vcf_with_no_protein Report
2 #Lineage Family Spoligotype RD Agreement
3 2
4 #CHR GENE IDENTIFIER PRODUCT TYPE ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHWAY 3 #CHR GENE IDENTIFIER PRODUCT IS_SNV ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHWAY
5 Chromosome Rv3753c Rv3753c O69720 snp missense_variant 4200220 G A p.Thr1Met MODERATE 4 Chromosome Rv3753c Rv3753c O69720 True missense_variant 4200220 G A p.Thr1Met MODERATE
6 Chromosome Rv3756c Rv3756c O69722 snp synonymous_variant 4202383 C A p.Val77Val LOW ABC transporters 5 Chromosome Rv3756c Rv3756c O69722 True synonymous_variant 4202383 C A p.Val77Val LOW ABC transporters
7 Chromosome Rv3759c Rv3759c O69725 snp missense_variant 4205120 G A p.Pro85Leu MODERATE ABC transporters 6 Chromosome Rv3759c Rv3759c O69725 True missense_variant 4205120 G A p.Pro85Leu MODERATE ABC transporters
8 Chromosome Rv3764c Rv3764c O69729 snp missense_variant 4210876 C T p.Arg45His MODERATE 7 Chromosome Rv3764c Rv3764c O69729 True missense_variant 4210876 C T p.Arg45His MODERATE
9 Chromosome Rv3769 Rv3769 P72036 snp missense_variant 4214747 C T p.His45Tyr MODERATE 8 Chromosome Rv3769 Rv3769 P72036 True missense_variant 4214747 C T p.His45Tyr MODERATE
10 Chromosome Rv3770c Rv3770c P72037 snp missense_variant 4215484 C G p.Ala98Pro MODERATE 9 Chromosome Rv3770c Rv3770c P72037 True missense_variant 4215484 C G p.Ala98Pro MODERATE
11 Chromosome Rv3772 Rv3772 P9WML5 snp missense_variant 4217557 G A p.Ala142Thr MODERATE Phenylalanine, tyrosine and tryptophan biosynthesis,Phenylalanine metabolism,Histidine metabolism,Tyrosine metabolism 10 Chromosome Rv3772 Rv3772 P9WML5 True missense_variant 4217557 G A p.Ala142Thr MODERATE Phenylalanine, tyrosine and tryptophan biosynthesis,Phenylalanine metabolism,Histidine metabolism,Tyrosine metabolism
12 Chromosome Rv3777 Rv3777 P72043 snp missense_variant 4223172 C T p.Ala160Val MODERATE 11 Chromosome Rv3777 Rv3777 P72043 True missense_variant 4223172 C T p.Ala160Val MODERATE
13 Chromosome Rv3785 Rv3785 P9WKX1 snp synonymous_variant 4232327 G A p.Arg336Arg LOW 12 Chromosome Rv3785 Rv3785 P9WKX1 True synonymous_variant 4232327 G A p.Arg336Arg LOW
14 Chromosome Rv3792 Rv3792 P9WN03 snp synonymous_variant 4238963 C T p.His344His LOW Arabinogalactan biosynthesis - Mycobacterium 13 Chromosome Rv3792 Rv3792 P9WN03 True synonymous_variant 4238963 C T p.His344His LOW Arabinogalactan biosynthesis - Mycobacterium
15 Chromosome Rv3792 Rv3792 P9WN03 snp missense_variant 4239274 C G p.Pro448Arg MODERATE Arabinogalactan biosynthesis - Mycobacterium 14 Chromosome Rv3792 Rv3792 P9WN03 True missense_variant 4239274 C G p.Pro448Arg MODERATE Arabinogalactan biosynthesis - Mycobacterium
16 Chromosome Rv3793 Rv3793 P9WNL5 snp missense_variant 4240671 T C p.Ile270Thr MODERATE Lipoarabinomannan (LAM) biosynthesis 15 Chromosome Rv3793 Rv3793 P9WNL5 True missense_variant 4240671 T C p.Ile270Thr MODERATE Lipoarabinomannan (LAM) biosynthesis
17 Chromosome Rv3795 Rv3795 P9WNL7 snp missense_variant 4247429 A G p.Met306Val MODERATE Arabinogalactan biosynthesis - Mycobacterium 16 Chromosome Rv3795 Rv3795 P9WNL7 True missense_variant 4247429 A G p.Met306Val MODERATE Arabinogalactan biosynthesis - Mycobacterium
18 Chromosome Rv3795 Rv3795 P9WNL7 snp missense_variant 4247646 C A p.Ala378Glu MODERATE Arabinogalactan biosynthesis - Mycobacterium 17 Chromosome Rv3795 Rv3795 P9WNL7 True missense_variant 4247646 C A p.Ala378Glu MODERATE Arabinogalactan biosynthesis - Mycobacterium
19 Chromosome Rv3797 Rv3797 O53577 snp synonymous_variant 4251297 C G p.Gly71Gly LOW 18 Chromosome Rv3797 Rv3797 O53577 True synonymous_variant 4251297 C G p.Gly71Gly LOW
20 Chromosome Rv3798 Rv3798 NOPROTEIN snp missense_variant 4254290 T G p.Leu433Arg MODERATE 19 Chromosome Rv3798 Rv3798 NOPROTEIN True missense_variant 4254290 T G p.Leu433Arg MODERATE
21 Chromosome Rv3799c Rv3799c O53578 snp missense_variant 4254478 G A p.His491Tyr MODERATE 20 Chromosome Rv3799c Rv3799c O53578 True missense_variant 4254478 G A p.His491Tyr MODERATE
22 Chromosome Rv3801c Rv3801c O53580 snp missense_variant 4261499 A G p.Val523Ala MODERATE 21 Chromosome Rv3801c Rv3801c O53580 True missense_variant 4261499 A G p.Val523Ala MODERATE