Mercurial > repos > iuc > tbvcfreport

annotate test-data/vcf_with_no_protein_report.txt @ 3:42818629ec4c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
author iuc
date Fri, 31 May 2024 20:06:49 +0000
parents 4934c0ac6197
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4934c0ac6197 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit eb93304c3aef325f02a62675d53c69a2b73c0fef"
iuc
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1 #Vcf_with_no_protein Report
4934c0ac6197 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit eb93304c3aef325f02a62675d53c69a2b73c0fef"
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42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
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3 #CHR GENE IDENTIFIER PRODUCT IS_SNV ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHWAY
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
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4 Chromosome Rv3753c Rv3753c O69720 True missense_variant 4200220 G A p.Thr1Met MODERATE
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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5 Chromosome Rv3756c Rv3756c O69722 True synonymous_variant 4202383 C A p.Val77Val LOW ABC transporters
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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6 Chromosome Rv3759c Rv3759c O69725 True missense_variant 4205120 G A p.Pro85Leu MODERATE ABC transporters
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
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7 Chromosome Rv3764c Rv3764c O69729 True missense_variant 4210876 C T p.Arg45His MODERATE
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
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8 Chromosome Rv3769 Rv3769 P72036 True missense_variant 4214747 C T p.His45Tyr MODERATE
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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9 Chromosome Rv3770c Rv3770c P72037 True missense_variant 4215484 C G p.Ala98Pro MODERATE
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
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10 Chromosome Rv3772 Rv3772 P9WML5 True missense_variant 4217557 G A p.Ala142Thr MODERATE Phenylalanine, tyrosine and tryptophan biosynthesis,Phenylalanine metabolism,Histidine metabolism,Tyrosine metabolism
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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11 Chromosome Rv3777 Rv3777 P72043 True missense_variant 4223172 C T p.Ala160Val MODERATE
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
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12 Chromosome Rv3785 Rv3785 P9WKX1 True synonymous_variant 4232327 G A p.Arg336Arg LOW
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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13 Chromosome Rv3792 Rv3792 P9WN03 True synonymous_variant 4238963 C T p.His344His LOW Arabinogalactan biosynthesis - Mycobacterium
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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14 Chromosome Rv3792 Rv3792 P9WN03 True missense_variant 4239274 C G p.Pro448Arg MODERATE Arabinogalactan biosynthesis - Mycobacterium
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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15 Chromosome Rv3793 Rv3793 P9WNL5 True missense_variant 4240671 T C p.Ile270Thr MODERATE Lipoarabinomannan (LAM) biosynthesis
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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16 Chromosome Rv3795 Rv3795 P9WNL7 True missense_variant 4247429 A G p.Met306Val MODERATE Arabinogalactan biosynthesis - Mycobacterium
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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17 Chromosome Rv3795 Rv3795 P9WNL7 True missense_variant 4247646 C A p.Ala378Glu MODERATE Arabinogalactan biosynthesis - Mycobacterium
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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18 Chromosome Rv3797 Rv3797 O53577 True synonymous_variant 4251297 C G p.Gly71Gly LOW
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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19 Chromosome Rv3798 Rv3798 NOPROTEIN True missense_variant 4254290 T G p.Leu433Arg MODERATE
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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20 Chromosome Rv3799c Rv3799c O53578 True missense_variant 4254478 G A p.His491Tyr MODERATE
42818629ec4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
iuc
parents: 2
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21 Chromosome Rv3801c Rv3801c O53580 True missense_variant 4261499 A G p.Val523Ala MODERATE