Mercurial > repos > iuc > tbvcfreport
diff test-data/vcf_with_no_protein_report.txt @ 3:42818629ec4c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
| author | iuc |
|---|---|
| date | Fri, 31 May 2024 20:06:49 +0000 |
| parents | 4934c0ac6197 |
| children |
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--- a/test-data/vcf_with_no_protein_report.txt Thu Mar 17 07:33:00 2022 +0000 +++ b/test-data/vcf_with_no_protein_report.txt Fri May 31 20:06:49 2024 +0000 @@ -1,22 +1,21 @@ #Vcf_with_no_protein Report -#Lineage Family Spoligotype RD Agreement -#CHR GENE IDENTIFIER PRODUCT TYPE ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHWAY -Chromosome Rv3753c Rv3753c O69720 snp missense_variant 4200220 G A p.Thr1Met MODERATE -Chromosome Rv3756c Rv3756c O69722 snp synonymous_variant 4202383 C A p.Val77Val LOW ABC transporters -Chromosome Rv3759c Rv3759c O69725 snp missense_variant 4205120 G A p.Pro85Leu MODERATE ABC transporters -Chromosome Rv3764c Rv3764c O69729 snp missense_variant 4210876 C T p.Arg45His MODERATE -Chromosome Rv3769 Rv3769 P72036 snp missense_variant 4214747 C T p.His45Tyr MODERATE -Chromosome Rv3770c Rv3770c P72037 snp missense_variant 4215484 C G p.Ala98Pro MODERATE -Chromosome Rv3772 Rv3772 P9WML5 snp missense_variant 4217557 G A p.Ala142Thr MODERATE Phenylalanine, tyrosine and tryptophan biosynthesis,Phenylalanine metabolism,Histidine metabolism,Tyrosine metabolism -Chromosome Rv3777 Rv3777 P72043 snp missense_variant 4223172 C T p.Ala160Val MODERATE -Chromosome Rv3785 Rv3785 P9WKX1 snp synonymous_variant 4232327 G A p.Arg336Arg LOW -Chromosome Rv3792 Rv3792 P9WN03 snp synonymous_variant 4238963 C T p.His344His LOW Arabinogalactan biosynthesis - Mycobacterium -Chromosome Rv3792 Rv3792 P9WN03 snp missense_variant 4239274 C G p.Pro448Arg MODERATE Arabinogalactan biosynthesis - Mycobacterium -Chromosome Rv3793 Rv3793 P9WNL5 snp missense_variant 4240671 T C p.Ile270Thr MODERATE Lipoarabinomannan (LAM) biosynthesis -Chromosome Rv3795 Rv3795 P9WNL7 snp missense_variant 4247429 A G p.Met306Val MODERATE Arabinogalactan biosynthesis - Mycobacterium -Chromosome Rv3795 Rv3795 P9WNL7 snp missense_variant 4247646 C A p.Ala378Glu MODERATE Arabinogalactan biosynthesis - Mycobacterium -Chromosome Rv3797 Rv3797 O53577 snp synonymous_variant 4251297 C G p.Gly71Gly LOW -Chromosome Rv3798 Rv3798 NOPROTEIN snp missense_variant 4254290 T G p.Leu433Arg MODERATE -Chromosome Rv3799c Rv3799c O53578 snp missense_variant 4254478 G A p.His491Tyr MODERATE -Chromosome Rv3801c Rv3801c O53580 snp missense_variant 4261499 A G p.Val523Ala MODERATE +#CHR GENE IDENTIFIER PRODUCT IS_SNV ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHWAY +Chromosome Rv3753c Rv3753c O69720 True missense_variant 4200220 G A p.Thr1Met MODERATE +Chromosome Rv3756c Rv3756c O69722 True synonymous_variant 4202383 C A p.Val77Val LOW ABC transporters +Chromosome Rv3759c Rv3759c O69725 True missense_variant 4205120 G A p.Pro85Leu MODERATE ABC transporters +Chromosome Rv3764c Rv3764c O69729 True missense_variant 4210876 C T p.Arg45His MODERATE +Chromosome Rv3769 Rv3769 P72036 True missense_variant 4214747 C T p.His45Tyr MODERATE +Chromosome Rv3770c Rv3770c P72037 True missense_variant 4215484 C G p.Ala98Pro MODERATE +Chromosome Rv3772 Rv3772 P9WML5 True missense_variant 4217557 G A p.Ala142Thr MODERATE Phenylalanine, tyrosine and tryptophan biosynthesis,Phenylalanine metabolism,Histidine metabolism,Tyrosine metabolism +Chromosome Rv3777 Rv3777 P72043 True missense_variant 4223172 C T p.Ala160Val MODERATE +Chromosome Rv3785 Rv3785 P9WKX1 True synonymous_variant 4232327 G A p.Arg336Arg LOW +Chromosome Rv3792 Rv3792 P9WN03 True synonymous_variant 4238963 C T p.His344His LOW Arabinogalactan biosynthesis - Mycobacterium +Chromosome Rv3792 Rv3792 P9WN03 True missense_variant 4239274 C G p.Pro448Arg MODERATE Arabinogalactan biosynthesis - Mycobacterium +Chromosome Rv3793 Rv3793 P9WNL5 True missense_variant 4240671 T C p.Ile270Thr MODERATE Lipoarabinomannan (LAM) biosynthesis +Chromosome Rv3795 Rv3795 P9WNL7 True missense_variant 4247429 A G p.Met306Val MODERATE Arabinogalactan biosynthesis - Mycobacterium +Chromosome Rv3795 Rv3795 P9WNL7 True missense_variant 4247646 C A p.Ala378Glu MODERATE Arabinogalactan biosynthesis - Mycobacterium +Chromosome Rv3797 Rv3797 O53577 True synonymous_variant 4251297 C G p.Gly71Gly LOW +Chromosome Rv3798 Rv3798 NOPROTEIN True missense_variant 4254290 T G p.Leu433Arg MODERATE +Chromosome Rv3799c Rv3799c O53578 True missense_variant 4254478 G A p.His491Tyr MODERATE +Chromosome Rv3801c Rv3801c O53580 True missense_variant 4261499 A G p.Val523Ala MODERATE