view test-data/test_18_path_clades.tabular @ 2:e0a0a473fc1e draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit 5de7b91f2bda9c351f9512601f899248b7278924
author iuc
date Sun, 17 Mar 2024 18:10:36 +0000
parents 79e2ee4e6ebb
children
line wrap: on
line source

clade	root_id	from_tree_root
19A	1	
B	1	
B.26	Scotland/EDB354/2020|20-03-30	 > C7423T,A29780C
B.48	5	 > C20270T
B.15	8	 > T4949C
B.5	9	 > C29635T
B.54	10	 > C14805T,G26144T
20A	28	 > C241T,C3037T,C14408T,A23403G
B.1.108	28	 > C241T,C3037T,C14408T,A23403G
B.20	660	 > A14940G
B.11	USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24	 > T514C,C22033A
B.46	USA/CA-QDX-1986/2020|MW190732.1|20-03-18	 > C11050T,A12557G,C24904T,A27359G
B.1.14	USA/CA-CZB-1015/2020|MT438733.1|20-04-22	 > T15867A,C25692T
B.19	USA/CA-CZB-1051/2020|MT449644.1|20-04-06	 > G7273A,C10277T
B.6	674	 > C6312A,C13730T,C23929T,C28311T
19B	676	 > C8782T,T28144C
A	676	 > C8782T,T28144C
B.4	699	 > G1397A,T28688C,G29742T
B.23	England/SHEF-BFF21/2020|20-03-25	 > C20270T > A18671G,A29683T
B.33	11	 > C14805T,G26144T > T17247C
B.29	England/ALDP-9EE3AC/2020|20-05-06	 > C14805T,G26144T > G20991T,C23707T
B.40	England/CAMB-8042A/2020|20-04-10	 > C14805T,G26144T > A2480G,C2558T,A4015T
B.41	SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29	 > C14805T,G26144T > G5572T,C28311T
B.1.105	England/CAMB-75BD8/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > C18060T,G28514T
B.1.103	47	 > C241T,C3037T,C14408T,A23403G > C25665T,G28325T
B.1.378	49	 > C241T,C3037T,C14408T,A23403G > G3871T
B.1.139	USA/WI-UW-558/2020|MT750137.1|20-06-25	 > C241T,C3037T,C14408T,A23403G > A696C
B.1.350	53	 > C241T,C3037T,C14408T,A23403G > G25563T
B.1.221.1	269	 > C241T,C3037T,C14408T,A23403G > C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T
B.1.222	Scotland/GCVR-172150/2020|20-03-30	 > C241T,C3037T,C14408T,A23403G > C1545T,C22879A
B.1.379	England/BRIS-122C4F/2020|20-04-02	 > C241T,C3037T,C14408T,A23403G > A11782G,G22203T,G27754T
B.1.182	275	 > C241T,C3037T,C14408T,A23403G > A20268G
B.1.5	341	 > C241T,C3037T,C14408T,A23403G > C15324T
B.1.215	Scotland/GCVR-173C30/2020|20-04-07	 > C241T,C3037T,C14408T,A23403G > G3831A,T7441C
20E.EU1	361	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T
B.1.177.14	361	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T
B.1.179	England/ALDP-4A2A77/2020|20-05-22	 > C241T,C3037T,C14408T,A23403G > C7834T,C16997T,G25429T
B.1.81	England/BRIS-12468B/2020|20-04-09	 > C241T,C3037T,C14408T,A23403G > C1909T,T27576C
B.1.201	England/NORW-E9DF7/2020|20-05-02	 > C241T,C3037T,C14408T,A23403G > C2940T,C7765T
B.1.395	398	 > C241T,C3037T,C14408T,A23403G > C6990T
B.1.67	Wales/PHWC-29E43/2020|20-04-04	 > C241T,C3037T,C14408T,A23403G > G9220A,T26512C
B.1.98	England/LOND-D3534/2020|20-03-27	 > C241T,C3037T,C14408T,A23403G > C25350T,T27280C
B.1.76	England/LIVE-A63E5/2020|20-03-18	 > C241T,C3037T,C14408T,A23403G > G680T,T17835C
B.1.376	Wales/PHWC-27461/2020|20-03-31	 > C241T,C3037T,C14408T,A23403G > C5506T,G14241T,C19374T
B.1.23	AUS/VIC1056/2020|MT451723.1|20-04-03	 > C241T,C3037T,C14408T,A23403G > T7438C,A21944T,C29353T
B.1.153	England/LIVE-A65EF/2020|20-03-19	 > C241T,C3037T,C14408T,A23403G > G10523C,G14580T
B.1.113	IND/GBRC209a/2020|MT664202.1|20-06-11	 > C241T,C3037T,C14408T,A23403G > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,G25563T,C29750T
B.1.70	Scotland/CVR30/2020|20-03-13	 > C241T,C3037T,C14408T,A23403G > C1884T,T26497C
B.1.145	IND/GBRC99/2020|MT509504.1|20-05-06	 > C241T,C3037T,C14408T,A23403G > G4866T,C14425A,A21511G
B.1.197	AUS/VIC1239/2020|MT451821.1|20-04-02	 > C241T,C3037T,C14408T,A23403G > C6723T,T26094C,G28476T
B.1.143	IND/GBRC128/2020|MT539172.1|20-05-02	 > C241T,C3037T,C14408T,A23403G > C4084T,G5572T
B.1.187	POL/PL_MCB_75/2020|MW273857.1|20-04-16	 > C241T,C3037T,C14408T,A23403G > A544G,C17104T
B.1.414	Netherlands/NA_302/2020|LR878041.1|20-04-01	 > C241T,C3037T,C14408T,A23403G > A3058G,G20275A
B.1.206	USA/TX-DSHS-0975/2020|MW217385.1|20-06-16	 > C241T,C3037T,C14408T,A23403G > G2282A,T9742C,C17639T,G20160T
B.1.69	423	 > C241T,C3037T,C14408T,A23403G > C23422T,T23849C,C29686T
20B	426	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C
B.1.195	England/ALDP-BCA4B0/2020|20-11-23	 > C241T,C3037T,C14408T,A23403G > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T
B.1.1.291	USA/WA-S1222/2020|MT821613.1|20-05-08	 > C241T,C3037T,C14408T,A23403G > C186T,C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T
B.18	England/LIVE-9D7D6/2020|20-04-15	 > G29711T > C1218T,C27493T,G27806T
B.13	USA/WI-UW-314/2020|MT706422.1|20-04-16	 > G29711T > A4838G,C7420T,C14937T,C20148T,G25907T
B.45	Scotland/CVR780/2020|20-03-27	 > C28854T > C5997T,C12710T
B.12	Japan/TKYE63557_2020/2020|LC581365.1|20-03	 > C28854T > C11752T,C25665T,C26447T,A27700G,T28854C,T28912C
B.6.6	MYS/188407/2020|MT372480.1|20-03-18	 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T,T25473C
A.2	682	 > C8782T,T28144C > T9477A,C14805T,G25979T
A.4	USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24	 > C8782T,T28144C > G16381A,T17877C,G25500T,C25854T,G28878A,G29742A
A.3	697	 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C
B.4.5	AUS/VIC1878/2020|MT745600.1|20-03-29	 > G1397A,T28688C,G29742T > C1076T,A28955T
B.37	13	 > C14805T,G26144T > T17247C > C8078T
B.32	Scotland/CVR44/2020|20-03-13	 > C14805T,G26144T > T17247C > G443A,A1587G
B.34	Scotland/CVR207/2020|20-03-18	 > C14805T,G26144T > T17247C > C988T,G12832A
B.1.391	England/CAMB-76515/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > G25429T > C16289T,T25429G
B.1.104	England/LEED-2A8D10/2020|20-03-31	 > C241T,C3037T,C14408T,A23403G > G25429T > C13730T,C25916T
B.1.254	35	 > C241T,C3037T,C14408T,A23403G > G25429T > A10874G,C25916T,T26677C
B.1.79	38	 > C241T,C3037T,C14408T,A23403G > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T
B.1.248	Scotland/CVR1519/2020|20-04-03	 > C241T,C3037T,C14408T,A23403G > G25429T > A6441G,A28841G
B.1.392	England/NORW-E8C37/2020|20-04-13	 > C241T,C3037T,C14408T,A23403G > G25429T > C3602T,C11460T,A24232G
B.1.252	43	 > C241T,C3037T,C14408T,A23403G > G25429T > G1589A,G29474T
B.1.249	England/PHEC-127E8/2020|20-03-28	 > C241T,C3037T,C14408T,A23403G > G25429T > G21538T
B.1.110	54	 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T
20C	61	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T
B.1.371	61	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T
B.1.440	211	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T
B.1.419	England/CAMB-79ECC/2020|20-04-01	 > C241T,C3037T,C14408T,A23403G > A20268G > A10323G,G21778A
B.1.416.1	England/QEUH-963433/2020|20-08-10	 > C241T,C3037T,C14408T,A23403G > A20268G > C2706T,C5339T,C25731T,C28833T
B.1.258	322	 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C
B.1.210	IND/GBRC174b/2020|MT607610.1|20-06-05	 > C241T,C3037T,C14408T,A23403G > C15324T > C3634T,C22444T,C28854T
B.1.178	France/10036BG/2020|MT470106.1|20-03	 > C241T,C3037T,C14408T,A23403G > C15324T > G28202A
B.1.213	POL/PL_MCB_97/2020|MW273879.1|20-05-10	 > C241T,C3037T,C14408T,A23403G > C15324T > C2570T,A7031G,G13617T
B.1.209	348	 > C241T,C3037T,C14408T,A23403G > C15324T > G19542T,G20679A,T27576G
B.1.149	England/QEUH-990752/2020|20-08-29	 > C241T,C3037T,C14408T,A23403G > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T
B.1.6	350	 > C241T,C3037T,C14408T,A23403G > C15324T > C15277T
B.1.218	Switzerland/240009/2020|LR880588.1|20-08-07	 > C241T,C3037T,C14408T,A23403G > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A
B.1.96	355	 > C241T,C3037T,C14408T,A23403G > A26530G > G11596T
B.1.128	356	 > C241T,C3037T,C14408T,A23403G > A26530G > C8293T,T18488C,T24739C
B.1.205	PER/covper091/2020|MW030227.1|20-03-17	 > C241T,C3037T,C14408T,A23403G > A26530G > C15277T,A21917G
B.1.97	England/CAMB-737D6/2020|20-03-31	 > C241T,C3037T,C14408T,A23403G > A26530G > A2775G,G4255T,C6861T,C13568T,A20355G
B.1.177.11	Scotland/QEUH-9D11C0/2020|20-09-16	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > T4195A,C10977T,C24334T,G25049T,G25062T,C26151T,C28657T,C29366T
B.1.177	366	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T
B.1.177.23	Switzerland/270068/2020|LR882987.1|20-09-02	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C13671T,C14805T,G17058T,G17278T,A20284T,T20285C,A27755T
B.1.177.17	England/ALDP-9E75E9/2020|20-09-25	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > A408G,G2764T,C22088T,C29686T
B.1.177.9	Wales/PHWC-4815AA/2020|20-10-13	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C12049T,G21800T,A22053C,G22346T
B.1.35	Wales/PHWC-16930B/2020|20-04-01	 > C241T,C3037T,C14408T,A23403G > C6990T > C3264T,C29200T
B.1.207	USA/TX-DSHS-1397/2020|MW309099.1|20-05-20	 > C241T,C3037T,C14408T,A23403G > A187G > A10770G,C16017T,T27212C,G27561T
B.1.198	England/BRIS-128DCE/2020|20-04-14	 > C241T,C3037T,C14408T,A23403G > A187G > C12213T,C19066A
B.1.1.119	427	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A
A.5	679	 > C8782T,T28144C > A23403G,C26088T > G9928T,G23403A
A.10	680	 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G
B.1.110.3	57	 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > C601T,G12832T,G27915A
B.1.110.1	CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18	 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G1319A,G2945A,C10156T,T17208C
B.1.110.2	England/LEED-2A87C7/2020|20-04-03	 > C241T,C3037T,C14408T,A23403G > G25563T > C8389T > G3230A,C23453T
B.1.485	USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T20037C,G28073T
B.1.22	67	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T1059C,C1594T,C11109T
B.1.349	68	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18555T,C28892T
B.1.491	72	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A3103C,C5893T,G24368T,A28117T
B.1.489	Wales/PHWC-2E0A2/2020|20-04-10	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C18568T,G24368T,C24621T
B.1.333	USA/WA-S2746/2020|MT947577.1|20-07-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T
B.1.448	USA/UT-05590/2020|MW084605.1|20-06-01	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A2151G,G19542T,C23551T,C28821A
B.1.310	Netherlands/NA_588/2020|LR883860.1|20	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18281A,A20742G,A20755C,G25784T
B.1.346	USA/NMDOH-2020308468/2020|MW228235.1|20-08-24	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T
B.1.320	USA/CA-CZB-1793/2020|MT750334.1|20-04-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C379A,A20503G
B.1.521	108	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T
B.1.294	USA/WI-UW-1119/2020|MT929068.1|20-07-27	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A19899T,A21464G
B.1.39	123	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8788C,G26951A
B.1.324	USA/TX-DSHS-1232/2020|MW309089.1|20-03-25	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7528T,G8213A
B.1.328	USA/MD-MDH-0071/2020|MT827237.1|20-05-25	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C775T,C23683T,C27923T,G28975T
B.1.341	USA/WA-QDX-235/2020|MT806806.1|20-04-27	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A12557C,A23534T
B.1.332	127	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1917T
B.1.325	USA/UT-QDX-2224/2020|MW191025.1|20-03-13	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C23191T,A25910C
B.1.411	134	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T
B.1.323	USA/MN-MDH-1596/2020|MT997714.1|20-05-12	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T9070C,C20325T
B.1.356	England/LIVE-A91F7/2020|20-03-25	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T13006C,C19186T,C25688T
B.1.268	146	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G3892T
B.1.287	USA/NMDOH-2020126568/2020|MW006567.1|20-06-15	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C16428T,C20555T,C21772T
B.1.38	USA/MN-MDH-1464/2020|MT919997.1|20-03-24	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C3044T,G25523T,T27869C
B.1.348	152	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C66T,C17069T,C26801T
B.1.413	USA/WA-UW-6327/2020|MT412324.1|20-04-02	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5240G,C26625T
B.1.360	154	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27847T
B.1.366	USA/TX-QDX-261/2020|MT806804.1|20-05-01	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T8041C,C18029T,G22225T
B.1.363	USA/TX-DSHS-0675/2020|MW093567.1|20-07-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C335T,G526C,T16425G
B.1.305	USA/WI-UW-994/2020|MT846680.1|20-07-20	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T
B.1.519	England/BRIS-127AD7/2020|20-04-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1968T,G3638T,G28808T,G29434C,G29705T
B.1.304	USA/WI-UW-522/2020|MT750102.1|20-06-24	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5310T,C12294T,C25511T
B.1.264	USA/DC-HP00089/2020|MT509482.1|20-03-31	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9510T,C11919T
B.1.313	USA/IL-UW-1065/2020|MT929017.1|20-04-20	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C5183T,G28878T
B.1.331	164	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25976A
B.1.165	165	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C7851T,C20233T
B.1.338	USA/WA-QDX-2548/2020|MW191307.1|20-03-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C25572T,G29747T
B.1.340	USA/COVID20-1144/2020|MW067817.1|20-07-10	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,T25577G,A28715T
B.1.444	USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G26730T,G27955A,C28854T
B.1.166	172	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1887T
B.1.120	Wales/PHWC-26B12/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C829T,G28371T
B.1.319	USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > T3037C,C10851T
B.1.487	USA/TX-DSHS-1428/2020|MW326536.1|20-06-23	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C1734T,G12160T,C23664T
B.1.355	USA/TX-DSHS-0051/2020|MW039116.1|20-05-09	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T
B.1.513	Northern_Ireland/NIRE-1021DD/2020|20-03-14	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > A6360G,G20709T
B.1.168	Scotland/EDB6052/2020|20-05-08	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G18213T,A18818G
B.1.312	184	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C9286T,G28899C
B.1.329	B90|LR898037.1|?	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C6406T,G18972A,A21360C
B.1.115	ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > G7295T,C28290T
B.1.276	USA/FL-BPHL-1462/2020|MW040672.1|20-04-20	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G26233T,C27881T
B.1.37	USA/TX-CDC-3009/2020|MT512440.1|20-03-10	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T9708C,C10712T
B.1.13	England/BRIS-130015/2020|20-04-11	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C6361T,C14786T,G20578T
B.1.479	204	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G10631T
B.1.277	Wales/PHWC-2AF12/2020|20-04-06	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C19884T,C26447A
B.1.474	207	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T
B.1.273	IHUCOVID-0428|LR794641.1|?	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > C6401T,T10480C,C13458T,C20946T
B.1.158	USA/WA-S3458/2020|MW494078.1|20-12-07	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T2300C,C3535T,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G
B.1.481	210	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > T17838C,G26450T
B.1.442	USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C27416T,G28086T
B.1.112	USA/UT-03892/2020|MT711875.1|20-04-13	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C683T,A6512C
B.1.163	USA/CA-CZB-1414/2020|MT628125.1|20-03-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > G10793T,C29311T
B.1.124	USA/WA-S1281/2020|MT821642.1|20-05-12	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A2161G,G11417T,C16376T
B.1.162	USA/WI-UW-288/2020|MT706396.1|20-04-08	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9195T,T15354C,C21855T
B.1.385	USA/FL-BPHL-1097/2020|MT956684.1|20-08-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T
B.1.438	England/ALDP-5D3DEC/2020|20-06-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1154G,G29474T
B.1.245	USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A1096G,C1420T,G14874T
B.1.9.1	Scotland/EDB5108/2020|20-03-31	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C2113T,C7765T,C17690T,T24923C
B.1.436	265	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > A25524G,C26801T,G29449T
B.1.443	USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C9967T,A11246T,A23949G,C29013T
B.1.232	Scotland/EDB3341/2020|20-04-08	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G27987T
B.1.402	USA/CA-CZB-11521/2020|MW276549.1|20-07-18	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4633T,T14643C,C22482T,G27506T
B.1.229	284	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G7798T
B.1.421	286	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T
B.1.235	Scotland/EDB3662/2020|20-04-28	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > T5507A,A19855G
B.1.403	USA/CA-CDC-4704/2020|MW001903.1|20-06-04	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C4596A,G19086T,C23114T
B.1.231	England/OXON-B1781/2020|20-05-04	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C1714T,C27213T
B.1.405	USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > G208T,G23522A,A25747C
B.1.447	297	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > A8884G,C16694A,C26177T
B.1.234	USA/WI-UW-1288/2020|MW035458.1|20-09-02	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C884T,G2258A,A6441G,C8140T,A9204G,C29445T
B.1.407	303	 > C241T,C3037T,C14408T,A23403G > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T
B.1.258.10	England/ALDP-A2FCA3/2020|20-10-05	 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > T7919G,C20451T,G21770A,C24734T
B.1.177.25	380	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G
B.1.177.20	England/ALDP-A68CF9/2020|20-10-12	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > G23311C > G6476T,C10626T
B.1.177.18	England/MILK-9F1898/2020|20-09-25	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > G23311C > C5239T,G25440T,C27752T
B.1.1.4	429	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C
B.1.1.8	446	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C6573T,C25528T
B.1.1.131	England/PHEC-1B7C1/2020|20-04-08	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18115T
B.1.1.125	Scotland/CVR3919/2020|20-06-21	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A22330G,T27264G
B.1.1.203	England/ALDP-9558ED/2020|20-06-12	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1800A,G2398A,C23854T,G25972A,G27842T
B.1.1.71	England/BRIS-12F78D/2020|20-03-10	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T11638C,C25584A
B.1.1.157	452	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C17678T
B.1.1.201	456	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T
B.1.1.238	USA/MA-QDX-3180/2021|MW505247.1|21-01-05	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T
B.1.1.172	USA/CA-CZB-1885/2020|MT750387.1|20-04-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4711C,A6709G,C17125T
B.1.1.192	USA/FL-BPHL-1469/2020|MW040679.1|20-05-09	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C673T
B.1.1.174	USA/CA-CZB-13945/2020|MW565647.1|20-06-22	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G443A,T6579C,G28378T
B.1.1.194	England/OXON-AEBC7/2020|20-04-12	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9430T,G24781T,G29706T
B.1.1.38	Wales/PHWC-164485/2020|20-05-02	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C9438T,A16653G,G29777T
B.1.1.155	England/ALDP-51F142/2020|20-06-02	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G922T,C6541T,C19983T
B.1.1.145	England/ALDP-49E391/2020|20-05-20	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3170T,C6336T,T26260G,C27673T
B.1.1.160	Northern_Ireland/NIRE-10677D/2020|20-05-14	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C10376T,G18148A,C26208T
B.1.1.165	475	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A27932G,G29705T
B.1.1.28	476	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T
B.1.1.255	England/ALDP-6839B9/2020|20-07-02	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T,A27691T
B.1.1.180	USA/FL-BPHL-1607/2020|MW166073.1|20-07-28	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C18652T,T22843C
B.1.1.55	England/NOTT-111117/2020|20-05-03	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C
B.1.1.95	England/ALDP-68EFBC/2020|20-07-02	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T13827C,G18756T,C23430T
B.1.1.275	495	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G3230A,T24076A
B.1.1.81	498	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C1420T,C19366T
B.1.1.1	499	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T
B.1.1.298	DK/KL14_Farm1/2020|MT919536.1|20-06-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C15656T,C25936T
B.1.1.270	511	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1630C,C27679T
B.1.1.292	513	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3373A
B.1.1.114	521	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T
B.1.1.314	542	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C
B.1.1.98	551	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T
B.1.1.43	Scotland/CVR3185/2020|20-04-28	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C16946T,G26615T
B.1.150	England/BRIS-127A40/2020|20-04-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2659T,C17249T,G17722T
B.1.1.164	England/EXET-136ED9/2020|20-04-22	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G2164A,C8733T
B.1.1.97	564	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G
B.1.1.256	England/MILK-95862C/2020|20-06-11	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T,G28557T
B.1.1.237	566	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T
B.1.1.86	570	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C
B.1.1.235	572	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C
B.1.1.134	Wales/PHWC-162E7A/2020|20-05-19	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C5497T,C6582T
B.1.1.37	England/ALDP-71D072/2020|20-07-01	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21637T,T26156C,A28169G
B.1.1.151	583	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T
B.1.1.148	England/PHEC-20B81/2020|20-04-16	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C20474T
B.1.1.12	England/MILK-9570D4/2020|20-06-10	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3163C,C7768T
B.1.1.229	DV_IZSPB_236_S50|LR992121.1|20-08-29	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T
B.1.1.307	England/ALDP-9D8FFC/2020|20-09-18	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T,T20613C
B.1.1.168	598	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C3177T,G22093A
B.1.1.239	England/LIVE-9BC33/2020|20-04-21	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C11620T
B.1.1.92	England/ALDP-5A2A49/2020|20-06-14	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3154C,C18981T
B.1.1.26	609	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A
B.1.1.116	USA/WA-S2573/2020|MT831840.1|20-06-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G18803T,A22606G
B.1.1.236	England/ALDP-9BEB16/2020|20-09-09	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,G14428T,T15156C,C20368T,C26527T,C29149T,G29239A
B.1.1.10	616	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A
20I/501Y.V1	618	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
B.1.1.7	618	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
B.1.1.25	621	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T
B.1.1.217	625	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19488T
B.1.1.96	628	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A11869G,T27484C
B.1.1.20	Scotland/EDB300/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C2399T,C15240T
B.1.1.178	England/CAMB-1AA438/2020|20-04-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T
B.1.1.280	England/MILK-9C4087/2020|20-09-09	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T1543A,C1938T,T4369C,T22020C,C27911T
B.1.1.56	England/PHEC-13ADF/2020|20-03-13	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T15978C,G24794T
B.1.1.132	USA/CA-CZB-2184/2020|MW035923.1|20-05-26	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C21205T,G21255C,G28960T
B.1.1.266	Scotland/QEUH-94375E/2020|20-08-02	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G25785T,G26152T,C27532T,G28321T,C29614T
B.1.1.72	641	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T
B.1.1.169	644	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G596T,T18231C
B.1.1.111	648	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C
B.1.1.318	USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C,C28720T
B.1.1.185	Netherlands/NA_359/2020|LR883961.1|20-04-07	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C7095T,C13502T,A16179G
B.1.1.13	England/CAMB-1AE7FF/2020|20-04-29	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G4207T,A4208C,C6033T,G11842T
B.1.359	USA/NY-QDX-1993/2020|MW190794.1|20-03-18	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G28376T
B.1.493	89	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G26020T
B.1.496	90	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T
B.1.494	USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C13252T
B.1.497	103	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T
20G	109	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T
B.1.2	109	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T
B.1.265	USA/MN-QDX-981/2020|MW065078.1|20-03-15	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C28833T
B.1.336	USA/CA-QDX-2685/2020|MW191430.1|20-03-17	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C9967T,G17590T
B.1.450	117	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G17808T
B.1.370	118	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > C24378T
B.1.423	USA/IL-UW-1064/2020|MT929016.1|20-07-26	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T
B.1.40	Scotland/EDB2451/2020|20-04-23	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10582T > C1076T,T10963A
B.1.367	Switzerland/240029/2020|LR880608.1|20-08-10	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,T27622C,G27632T,C27804T,C28830A,G29402T,G29779T
B.1.281	BHR/920262933_S19_L001/2020|MW228054.1|20-06-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C2937T,C21310A
B.1.465	England/SHEF-10B22B9/2020|20-04-20	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > T241C,G3482A,A8821G,C15752T,G24197T,T26066C
B.1.454	IND/GBRC-366a/2020|MT951170.1|20-06-18	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C26058T,G28851T
B.1.468	220	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T
B.1.36	223	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T
20A.EU2	240	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A
B.1.160	240	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A
B.1.470	243	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T
B.1.471	England/QEUH-96A29C/2020|20-08-13	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C15654T,C16915T,G21204T,T24202C,G28899T,G29692T
B.1.258.4	England/MILK-A474DA/2020|20-10-06	 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > C16394T,C22127T,G23876A,G25947T,C29274T > A6659G,G25218T
B.1.258.5	England/QEUH-AA0035/2020|20-10-20	 > C241T,C3037T,C14408T,A23403G > A20268G > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C > C16394T,C22127T,G23876A,G25947T,C29274T > T8110C,G11417T
B.1.177.21	England/ALDP-9BE8B5/2020|20-09-09	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > T16242A,G28745A
B.1.177.22	369	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T
B.1.177.2	England/ALDP-9BECB9/2020|20-09-10	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > T14721C,C23029T,T25519G
B.1.177.3	England/MILK-9A9D09/2020|20-09-01	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > A1230G,G6344T
B.1.177.4	England/CAMC-AEA62E/2020|20-10-25	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > A1987G > C66T,G10870T,A11781G,C18329T,C25614T
B.1.1.74	England/QEUH-7A4BBB/2020|20-07-14	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C2511T,G3242A,G8120C,C21646T,A24205T,G28083T
B.1.1.158	USA/WA-S1922/2020|MT831459.1|20-06-03	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G242T,C12528A,C18086T
B.1.1.290	USA/WA-S1775/2020|MT834200.1|20-06-01	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G13513A,C28256T,C29784T
R.1	England/ALDP-B82A0D/2020|20-11-14	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C4456T,C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T
R.2	443	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T
20J/501Y.V3	USA/MD-MDH-0841/2021|MW621433.1|21-01-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > T733C,C2749T,C3828T,A5648C,A6319G,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,T26149C,G28167A,C28512G,A28877T,G28878C
B.1.1.251	England/NORW-EE34B/2020|20-03-24	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25088T > G18315A,C24904T,T25088G
20D	500	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T
C.6	500	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T
B.1.1.284	Japan/TKYE627000_2020/2020|LC593811.1|20-08	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T4346C,C7728T,C9286T,C10376T,C14708T,C28725T,G29692T
B.1.1.303	England/QEUH-96E605/2020|20-08-17	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C2841T,G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G
B.1.1.113	USA/ME-HETL-J0061/2020|MT886346.1|20-03-20	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > A11348G,G28690T
B.1.1.179	IND/GBRC455a/2020|MW600436.1|20-12-24	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G160T,T682C,C900T,G3259T,C4048T,C5700A,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T
B.1.1.285	USA/FL-BPHL-0303/2020|MT757111.1|20-05-30	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C823T,A11023G
B.1.1.214	Japan/TKYE622411_2020/2020|LC593808.1|20-07	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T,G29773T
B.1.1.272	England/MILK-A18C8F/2020|20-10-03	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T
B.1.1.49	Wales/PHWC-30957/2020|20-04-08	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > T11654C,G22627A,G28628T
B.1.1.283	LC573289.2|20-06	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > G2305T,G25563C,G28178T
B.1.1.181	TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C313T > C2509T,G5015A,C14724T,G24262T,G27703T
B.1.1.33	543	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C
B.1.1.279	England/BRIS-125D67/2020|20-03-29	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > C6347T,G18859T
B.1.1.149	569	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T
B.1.146	England/CAMC-947392/2020|20-07-18	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G26918T,T29464C > C7843T,G15438T,C25207T,T25949C,C28453T
B.1.1.308	England/CAMC-A40F67/2020|20-10-06	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G,A12529G
B.1.1.309	586	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > C835T
B.1.1.310	Northern_Ireland/NIRE-FB369/2020|20-08-31	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G25617T > A6900G,G25456T
B.1.1.260	England/LEED-2AA394/2020|20-03-31	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G11230T,C20941T,G23587C
B.1.1.259	592	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T
B.1.1.300	England/ALDP-5D52BE/2020|20-06-18	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > T13794G,T28494C
B.1.1.299	England/ALDP-4A2BFC/2020|20-05-22	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A20826G,A23207G
B.1.1.301	England/ALDP-49F5B8/2020|20-05-22	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10265A > A19650G,T21368C
B.1.1.233	USA/WA-S2598/2020|MT831859.1|20-06-18	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T,G29254T
B.1.1.65	USA/WA-S820/2020|MT641503.1|20-04-15	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G16813A > A5538T,G17261A,T25783C
L.2	617	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T
20F	623	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A
D.2	623	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A
B.1.1.218	England/CAMC-947259/2020|20-07-21	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C
A.2.3	Scotland/CVR2435/2020|20-04-14	 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C4540T,C28657T > C15274T,C25714T,C26029A
A.2.2	AUS/VIC995/2020|MT451680.1|20-03-31	 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C4540T,C28657T > G17632A,C28311T
B.1.507	USA/VA-DCLS-1147/2020|MT992749.1|20-04	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G,G22487C
B.1.499	USA/NY-QDX-2365/2020|MW191144.1|20-03-16	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T
B.1.508	USA/CA-CZB-2139/2020|MT750510.1|20-05-21	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C5540A,C19145T
B.1.501	USA/NC-QDX-174/2020|MT786825.1|20-04-27	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,C18693A,G26828T
B.1.505	England/MILK-6166F0/2020|20-07-05	 > C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T22912G,T24805C,C26270T
B.1.282	England/ALDP-955F15/2020|20-06-08	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G25793A,G28907T
B.1.477	England/ALDP-94EB75/2020|20-06-17	 > C241T,C3037T,C14408T,A23403G > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A
B.1.36.20	221	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T
B.1.36.21	England/PHEC-149F0D/2020|20-11-19	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C1122T,T4057C,G6077T,A10323G,G13858T,G21724T,C27092T,C27434T,G28975T
B.1.36.23	England/MILK-970CE0/2020|20-08-18	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,G26389T,T26876C,C28311T,A28900C
B.1.36.24	England/SHEF-10CC3AA/2020|20-12-17	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C1420T,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C
B.1.36.12	England/MILK-566C5A/2020|20-06-12	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T
B.1.36.10	237	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T
B.1.177.7	373	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T > C15480T
B.1.177.8	Scotland/QEUH-9B75D3/2020|20-09-04	 > C241T,C3037T,C14408T,A23403G > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > C27944T > G204T > C21614T > G8179T,G29778T
B.1.1.289	Wales/PHWC-260AA/2020|20-03-24	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G25552T > T7168C,G11801A
B.1.1.2	434	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C
C.5	Switzerland/300433/2020|LR898634.1|20-09-29	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,G27382T,T27808C
C.4	SRB/NS19622-16-06/2020|MW327528.1|20-06-15	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T
B.1.36.1	England/CAMC-A65DDB/2020|20-10-11	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,C25349A,G25947C,G26062T
B.1.36.28	England/QEUH-9F3FDD/2020|20-09-24	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C
B.1.36.17	England/QEUH-96A85E/2020|20-08-14	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,T23986C,C29555T
B.1.36.27	228	 > C241T,C3037T,C14408T,A23403G > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T
N.1	USA/MA_MGH_00693/2020|MT520290.1|20-04-06	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,T28360C,C29769T
N.4	CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13	 > C241T,C3037T,C14408T,A23403G > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G,C14805T