Mercurial > repos > iuc > vsearch

annotate test-data/alignment_result1.fasta @ 0:fae6527990af draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Imported from capsule None
author iuc
date Thu, 21 May 2015 03:58:09 -0400
parents
children 4258854759ba
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
1 vsearch --threads 1 --notrunclabels --id 0.97 --iddef 2 --allpairs_global /tmp/tmpn4c95N/files/000/dataset_1.dat --alnout /tmp/tmpn4c95N/files/000/dataset_2.dat --query_cov 0.95
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
2 vsearch v1.1.3_linux_x86_64, 7.7GB RAM, 4 cores
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
3
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
4 Query >RF00177;SSU_rRNA_bacteria;CP001742.1/177780-176277 666510:Acidilobus saccharovorans 345-15
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
5 %Id TLen Target
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
6 100% 1497 RF01959;SSU_rRNA_archaea;CP001742.1/177775-176279 666510:Acidilobus saccharovorans 345-15
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
7
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
8 Query 1504nt >RF00177;SSU_rRNA_bacteria;CP001742.1/177780-176277 666510:Acidilobus saccharovorans 345-15
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
9 Target 1497nt >RF01959;SSU_rRNA_archaea;CP001742.1/177775-176279 666510:Acidilobus saccharovorans 345-15
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
10
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
11 Qry 6 + ACUCCGGUUGAUCCUGCCGGACCCGACUGCUAUCGGGGUGAGGCUAAGCCAUGGGAGUCGCGCG 69
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
12 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
13 Tgt 1 + ACUCCGGUUGAUCCUGCCGGACCCGACUGCUAUCGGGGUGAGGCUAAGCCAUGGGAGUCGCGCG 64
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
14
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
15 Qry 70 + CCCAGCCGCCGCUGGGCGCGGCGCACGGCUGAGUAACACGUAGCUAACCUACCCUCGGGACGGG 133
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
16 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
17 Tgt 65 + CCCAGCCGCCGCUGGGCGCGGCGCACGGCUGAGUAACACGUAGCUAACCUACCCUCGGGACGGG 128
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
18
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
19 Qry 134 + GAUAACCCCGGGAAACUGGGGCUAAUCCCCGAUAGGCGAGGGGGCCUGGAAUGGUCCCUCGCCG 197
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
20 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
21 Tgt 129 + GAUAACCCCGGGAAACUGGGGCUAAUCCCCGAUAGGCGAGGGGGCCUGGAAUGGUCCCUCGCCG 192
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
22
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
23 Qry 198 + AAAGGGACCCUGGGGGGUUAUCGCCUGGGGUCCGCCCGAGGAUGGGGCUGCGGCCCAUCAUGGU 261
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
24 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
25 Tgt 193 + AAAGGGACCCUGGGGGGUUAUCGCCUGGGGUCCGCCCGAGGAUGGGGCUGCGGCCCAUCAUGGU 256
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
26
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
27 Qry 262 + AGUUGGCGGGGUAAUGGCCCGCCAAGCCGACGACGGGUAGGGGCCGUGGGAGCGGGAGCCCCCA 325
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
28 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
29 Tgt 257 + AGUUGGCGGGGUAAUGGCCCGCCAAGCCGACGACGGGUAGGGGCCGUGGGAGCGGGAGCCCCCA 320
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
30
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
31 Qry 326 + GAUGGGCCCUGAGACAAGGGCCCAGGCCCUACGGGGCGCACCAGGCGCGAAACCUCCGCAAUGC 389
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
32 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
33 Tgt 321 + GAUGGGCCCUGAGACAAGGGCCCAGGCCCUACGGGGCGCACCAGGCGCGAAACCUCCGCAAUGC 384
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
34
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
35 Qry 390 + GGGAAACCGUGACGGGGUCACCCCGAGUGCUCCCGUAAGGGAGCUUUUCCCCGCUGCAAGGAGG 453
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
36 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
37 Tgt 385 + GGGAAACCGUGACGGGGUCACCCCGAGUGCUCCCGUAAGGGAGCUUUUCCCCGCUGCAAGGAGG 448
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
38
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
39 Qry 454 + CGGGGGAAUAAGCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGUAAUACCAGCCCCGCGAGUGG 517
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
40 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
41 Tgt 449 + CGGGGGAAUAAGCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGUAAUACCAGCCCCGCGAGUGG 512
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
42
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
43 Qry 518 + UCGGGACGUCUACUGGGCCUAAAGCGCCCGUAGCCGGCCCCGUAAGUCCCUCCUGAAAGCCCUG 581
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
44 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
45 Tgt 513 + UCGGGACGUCUACUGGGCCUAAAGCGCCCGUAGCCGGCCCCGUAAGUCCCUCCUGAAAGCCCUG 576
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
46
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
47 Qry 582 + GGCUCAACCCAGGGAGUGGGGGGGAUACUGCGGGGCUAGGGGGCGGGAAAGGCCGGGGGUACCC 645
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
48 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
49 Tgt 577 + GGCUCAACCCAGGGAGUGGGGGGGAUACUGCGGGGCUAGGGGGCGGGAAAGGCCGGGGGUACCC 640
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
50
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
51 Qry 646 + CAGGGGUAGGGGCGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 709
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
52 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
53 Tgt 641 + CAGGGGUAGGGGCGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 704
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
54
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
55 Qry 710 + ACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGGAGCGAACCGGAUUAGAUACCCGGGUAGUCCC 773
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
56 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
57 Tgt 705 + ACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGGAGCGAACCGGAUUAGAUACCCGGGUAGUCCC 768
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
58
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
59 Qry 774 + GGCUGUAAACGAUGCGGGCUAGGUGUCGGGCGGGCGUUAGAGCCCGCCCGGUGCCGCAGGGAAG 837
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
61 Tgt 769 + GGCUGUAAACGAUGCGGGCUAGGUGUCGGGCGGGCGUUAGAGCCCGCCCGGUGCCGCAGGGAAG 832
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
62
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
63 Qry 838 + CCGUUAAGCCCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUUUAAGGAAUUGGCGGGGGG 901
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
64 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
65 Tgt 833 + CCGUUAAGCCCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUUUAAGGAAUUGGCGGGGGG 896
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
66
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
67 Qry 902 + GCACACAAGGGGUGGAGCCUGCGGCUCAAUUGGAGUCAACGCCGGGAACCUCACCGGGGGCGAC 965
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
68 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
69 Tgt 897 + GCACACAAGGGGUGGAGCCUGCGGCUCAAUUGGAGUCAACGCCGGGAACCUCACCGGGGGCGAC 960
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
70
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
71 Qry 966 + AGCAGGAUGACGGCCAGGCUAACGACCUUGCCCGACGCGCUGAGGGGAGGUGCAUGGCCGUCGC 1029
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
72 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
73 Tgt 961 + AGCAGGAUGACGGCCAGGCUAACGACCUUGCCCGACGCGCUGAGGGGAGGUGCAUGGCCGUCGC 1024
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
74
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
75 Qry 1030 + CAGCUCGUGCUGUGAAGUGUCCUGUUAAGUCAGGCAACGAGCGAGACCCCCGCCCCUAGUUGCG 1093
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
77 Tgt 1025 + CAGCUCGUGCUGUGAAGUGUCCUGUUAAGUCAGGCAACGAGCGAGACCCCCGCCCCUAGUUGCG 1088
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
78
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
79 Qry 1094 + ACCCGGCGGGAGACCGCUGGGGCACACUAGGGGGACUGCCGCCGCUAAGGCGGAGGAAGGAGGG 1157
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
80 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
81 Tgt 1089 + ACCCGGCGGGAGACCGCUGGGGCACACUAGGGGGACUGCCGCCGCUAAGGCGGAGGAAGGAGGG 1152
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
82
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
83 Qry 1158 + GGCCACGGCAGGUCAGCAUGCCCCUAAACCCCCGGGCUGCACGCGGGCUACAAUGGCGGGGACA 1221
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
84 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
85 Tgt 1153 + GGCCACGGCAGGUCAGCAUGCCCCUAAACCCCCGGGCUGCACGCGGGCUACAAUGGCGGGGACA 1216
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
86
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
87 Qry 1222 + GCGGGAUCCGACCCCGAAAGGGGGAGGCAAUCCCUCAAACCCCGCCGUAGUCGGGAUUGGGGGC 1285
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
88 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
89 Tgt 1217 + GCGGGAUCCGACCCCGAAAGGGGGAGGCAAUCCCUCAAACCCCGCCGUAGUCGGGAUUGGGGGC 1280
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
90
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
91 Qry 1286 + UGUAACUCGCCCCCAUGAACCUGGAAUCCCUAGUAACCGCGCGUCAACAUCGCGCGGUGAAUAC 1349
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
92 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
93 Tgt 1281 + UGUAACUCGCCCCCAUGAACCUGGAAUCCCUAGUAACCGCGCGUCAACAUCGCGCGGUGAAUAC 1344
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
94
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
95 Qry 1350 + GUCCCUGCCCCUUGUACACACUGCCCGUCGCUCCACCUGAGAGAAGGAGGGGUGAGGCUUCCUC 1413
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
96 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
97 Tgt 1345 + GUCCCUGCCCCUUGUACACACUGCCCGUCGCUCCACCUGAGAGAAGGAGGGGUGAGGCUUCCUC 1408
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
98
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
99 Qry 1414 + CUUCGGGAGGGAGUCGAACCCCUCCUUCUCGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGG 1477
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
100 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
101 Tgt 1409 + CUUCGGGAGGGAGUCGAACCCCUCCUUCUCGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGG 1472
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
102
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
103 Qry 1478 + GGAACCUGCGGCUGGAUCACCUCUC 1502
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
104 |||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
105 Tgt 1473 + GGAACCUGCGGCUGGAUCACCUCUC 1497
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
106
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
107 1497 cols, 1497 ids (100.0%), 0 gaps (0.0%)
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
108
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
109 Query >RF00423;SCARNA4;AAVX01260432.1/2253-2118 7868:Callorhinchus milii (ghost shark)
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
110 %Id TLen Target
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
111 100% 134 RF00426;SCARNA15;AAVX01260432.1/2252-2119 7868:Callorhinchus milii (ghost shark)
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
112
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
113 Query 136nt >RF00423;SCARNA4;AAVX01260432.1/2253-2118 7868:Callorhinchus milii (ghost shark)
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
114 Target 134nt >RF00426;SCARNA15;AAVX01260432.1/2252-2119 7868:Callorhinchus milii (ghost shark)
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
115
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
116 Qry 2 + UCGGAGGAAUAAGAAAGCACAGUCUCGAGAGUGUCCAUGACUUUGCUGAUACUCUCCUCCUAUA 65
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
118 Tgt 1 + UCGGAGGAAUAAGAAAGCACAGUCUCGAGAGUGUCCAUGACUUUGCUGAUACUCUCCUCCUAUA 64
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
119
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
120 Qry 66 + GAAAAGUGGUGGAAGAACAGGUCUUCUCUUGUGGCUGUGGAGUUCUGACCUACUUAAUCCACUC 129
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
121 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
122 Tgt 65 + GAAAAGUGGUGGAAGAACAGGUCUUCUCUUGUGGCUGUGGAGUUCUGACCUACUUAAUCCACUC 128
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
123
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
124 Qry 130 + ACAAGU 135
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
125 ||||||
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
126 Tgt 129 + ACAAGU 134
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
127
fae6527990af Imported from capsule None
iuc
parents:
diff changeset
128 134 cols, 134 ids (100.0%), 0 gaps (0.0%)