Mercurial > repos > jackcurragh > ribogalaxy_bedgraphtobigwig

comparison bedGraphToBigWig/bedGraphToBigWig.xml @ 0:954fe50ebd55 draft

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author jackcurragh
date Mon, 04 Apr 2022 09:54:12 +0000
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1 <tool id="bedGraphToBigWig" name="Convert a bed file to a BigWig" version="1.0">
2 <description>Converting your ribosome profile bed file to a bigwig which is used for track creation on GWIPS-Viz</description>
3 <command><![CDATA[
4 $__tool_directory__/bedGraphToBigWig ${input1} ${input2} ${output1}
5 ]]></command>
6 <inputs>
7 <param name="input1" type="data" format="bed" label="Bed File" />
8 <param name="input2" type="data" format="tabular" label="Chromosome Sizes" />
9 </inputs>
10 <outputs>
11 <data name="output1" format="bigwig"/>
12 </outputs>
13 <tests>
14 <test>
15 <param name="input1" value="test.bed" ftype="bed" />
16 <param name="input2" value="test.chrom.sizes" ftype="tabular" />
17 <output name="output1" file="test.bw" ftype="bigwig" lines_diff="4" />
18 </test>
19 </tests>
20 <help>
21
22 </help>
23 <citations/>
24 </tool>