|
3
|
1 <tool id="generate_custom_track" name="Generate Custom Track" version="0.2">
|
|
0
|
2 <description>Generates a Custom Track File for GWIPS-viz.</description>
|
|
|
3 <command>
|
|
2
|
4 python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4" $input5 $output1
|
|
0
|
5 </command>
|
|
|
6
|
|
|
7 <inputs>
|
|
|
8 <param name="input1" type="select" label="File Type">
|
|
|
9 <option value="bigWig" selected="True">bigWig</option>
|
|
|
10 <option value="bigBed">bigBed</option>
|
|
|
11 </param>
|
|
|
12 <param name="input2" type="text" label="URL of File (copy link from history)" />
|
|
|
13 <param name="input3" type="text" label="Name of this sample" />
|
|
|
14 <param name="input4" type="text" label="Description of this sample" />
|
|
2
|
15 <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600" />
|
|
0
|
16 </inputs>
|
|
|
17 <outputs>
|
|
3
|
18 <data name="output1" format="txt"/>
|
|
0
|
19 </outputs>
|
|
2
|
20
|
|
0
|
21 <help>
|
|
|
22 **What it does**
|
|
|
23
|
|
|
24 Generates a custom track file for GWIPS-viz.
|
|
|
25
|
|
|
26 This is facilitates easy exploration of data processed on RiboGalaxy at a Genome wide scale.
|
|
|
27 </help>
|
|
|
28 </tool> |
