Mercurial > repos > jackcurragh > ribogalaxy_generate_custom_track
changeset 2:1fd87301a4fb draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Fri, 23 Sep 2022 13:17:31 +0000 |
| parents | 02ba4bc97345 |
| children | f46c581ca166 |
| files | generate_custom_track/generate_custom_track.xml |
| diffstat | 1 files changed, 3 insertions(+), 10 deletions(-) [+] |
line wrap: on
line diff
--- a/generate_custom_track/generate_custom_track.xml Fri Sep 23 13:14:28 2022 +0000 +++ b/generate_custom_track/generate_custom_track.xml Fri Sep 23 13:17:31 2022 +0000 @@ -1,7 +1,7 @@ <tool id="generate-custom_track" name="Generate Custom Track" version="0.1"> <description>Generates a Custom Track File for GWIPS-viz.</description> <command> - python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4" + python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4" $input5 $output1 </command> <inputs> @@ -12,18 +12,12 @@ <param name="input2" type="text" label="URL of File (copy link from history)" /> <param name="input3" type="text" label="Name of this sample" /> <param name="input4" type="text" label="Description of this sample" /> - <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600"/> + <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600" /> </inputs> <outputs> <data name="output1" format="text"/> </outputs> - <tests> - <test> - <param name="input1" value="test.fasta" ftype="fasta" /> - <param name="input2" value="chr"/> - <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" /> - </test> - </tests> + <help> **What it does** @@ -31,5 +25,4 @@ This is facilitates easy exploration of data processed on RiboGalaxy at a Genome wide scale. </help> - <citations/> </tool> \ No newline at end of file