Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
comparison get_chrom_sizes/calculating_chrom.sizes.py @ 40:9b2bb994fc76 draft
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author | jackcurragh |
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date | Fri, 10 Feb 2023 12:20:56 +0000 |
parents | feeee18b0084 |
children |
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39:16abcccd3905 | 40:9b2bb994fc76 |
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19 record = False | 19 record = False |
20 for line in open(genome, 'r').readlines(): | 20 for line in open(genome, 'r').readlines(): |
21 if line[0] == '>': | 21 if line[0] == '>': |
22 if record: | 22 if record: |
23 records.append(record) | 23 records.append(record) |
24 record = [line.strip("\n").split(' ')[0][1:], 0] | 24 record = [line.strip("\n").split(' ')[0].split(" ")[0][1:], 0] |
25 | 25 |
26 else: | 26 else: |
27 sequence = line.strip('\n') | 27 sequence = line.strip('\n') |
28 record[1] += len(sequence) | 28 record[1] += len(sequence) |
29 | 29 |