Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

changeset 20:147706e55621 draft

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Uploaded
author jackcurragh
date Wed, 18 May 2022 08:25:36 +0000
parents 4a020e3ddc1b
children cc021a23613b
files get_chrom_sizes/get_chrom_sizes.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 14:19:13 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Wed May 18 08:25:36 2022 +0000
@@ -1,12 +1,15 @@
 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2">
     <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description>
     <command>
-        python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} "${output1}"
+        python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2}
             #if $refGenomeSource.genomeSource == "builtin":
                 ${refGenomeSource.input1_builtin.fields.path} 
             #else:
                 ${refGenomeSource.input1_file}
             #end if
+            #if $output1 == $output1:
+                ${output1}
+            #end if
             
     </command>
     <inputs>