Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

changeset 26:185133c56545 draft

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Uploaded
author jackcurragh
date Fri, 27 May 2022 10:13:03 +0000
parents 3276016ac5b3
children a6b6e48756f9
files get_chrom_sizes/get_chrom_sizes.xml get_chrom_sizes/tool-data/builtin_fastas.loc.sample
diffstat 2 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/get_chrom_sizes/get_chrom_sizes.xml	Wed May 18 10:35:44 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Fri May 27 10:13:03 2022 +0000
@@ -1,5 +1,5 @@
-<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2">
-    <description>Generates a tab delimited chrom.sizes file from an inputted fasta</description>
+<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.3">
+    <description>Generates a TAB Delimited chrom.sizes File from an Inputted FASTA</description>
     <command>
         python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2}
             #if $refGenomeSource.genomeSource == "builtin":
--- a/get_chrom_sizes/tool-data/builtin_fastas.loc.sample	Wed May 18 10:35:44 2022 +0000
+++ b/get_chrom_sizes/tool-data/builtin_fastas.loc.sample	Fri May 27 10:13:03 2022 +0000
@@ -1,8 +1,8 @@
-mus_musculus_m28	m28	Mus musculus (m28) Genome	/data2/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28.fa
-drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Genome	/data2/indices/bowtie/genome/drosophila_melanogater_dm6/dm6.fa
-sacCer_9	sacCer9	Saccharomyces cerevisiae (v9) Genome	/data2/indices/bowtie/genome/sacCer_9/S288C_reference_sequence_R9-1-1_19990210.fsa
-sarCer_3	sacCer3	Saccharomyces cerevisiae (v3) Genome	/data2/indices/bowtie/genome/sacCer_3/S288C_reference_sequence_R3-1-1_19970730.fsa
-E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655) Genome	/data2/indices/bowtie/genome/E_coli_K12_MG1655/GCF_003368535.1_ASM336853v1_genomic.fna
-Arabidopsis	araThal	Arabidopsis thaliana (TAIR10) Genome	/data2/indices/bowtie/genome/Arabidopsis/GCF_000001735.4_TAIR10.1_genomic.fna
-homo_sapiens_hg19	hg19	Homo sapiens (hg19) Genome	/data2/indices/bowtie/genome/homo_sapiens_hg19/hg19.fa
-homo_sapiens_hg38	hg38	Homo sapiens (hg38) Genome	/data2/indices/bowtie/genome/homo_sapiens_hg38/hg38.fa
\ No newline at end of file
+mus_musculus_m28	m28	Mus musculus (m28) Genome	/mnt/data/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28.fa
+drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Genome	/mnt/data/indices/bowtie/genome/drosophila_melanogater_dm6/dm6.fa
+sacCer_9	sacCer9	Saccharomyces cerevisiae (v9) Genome	/mnt/data/indices/bowtie/genome/sacCer_9/S288C_reference_sequence_R9-1-1_19990210.fsa
+sarCer_3	sacCer3	Saccharomyces cerevisiae (v3) Genome	/mnt/data/indices/bowtie/genome/sacCer_3/S288C_reference_sequence_R3-1-1_19970730.fsa
+E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655) Genome	/mnt/data/indices/bowtie/genome/E_coli_K12_MG1655/GCF_003368535.1_ASM336853v1_genomic.fna
+Arabidopsis	araThal	Arabidopsis thaliana (TAIR10) Genome	/mnt/data/indices/bowtie/genome/Arabidopsis/GCF_000001735.4_TAIR10.1_genomic.fna
+homo_sapiens_hg19	hg19	Homo sapiens (hg19) Genome	/mnt/data/indices/bowtie/genome/homo_sapiens_hg19/hg19.fa
+homo_sapiens_hg38	hg38	Homo sapiens (hg38) Genome	/mnt/data/indices/bowtie/genome/homo_sapiens_hg38/hg38.fa
\ No newline at end of file