Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

changeset 22:48d8d8217ac4 draft

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Uploaded
author jackcurragh
date Wed, 18 May 2022 10:19:10 +0000
parents cc021a23613b
children ca6a237895f3
files get_chrom_sizes/get_chrom_sizes.xml
diffstat 1 files changed, 3 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/get_chrom_sizes/get_chrom_sizes.xml	Wed May 18 08:47:20 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Wed May 18 10:19:10 2022 +0000
@@ -3,13 +3,11 @@
     <command>
         python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2}
             #if $refGenomeSource.genomeSource == "builtin":
-                ${refGenomeSource.input1_builtin.fields.path} 
+                ${refGenomeSource.input1_builtin.fields.path} ${output1}
             #else:
-                ${refGenomeSource.input1_file}
+                ${refGenomeSource.input1_file} ${output1}
             #end if
-            #if $output1 == $output1:
-                ${output1}
-            #end if
+
             
     </command>
     <inputs>