Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

changeset 24:feeee18b0084 draft

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Uploaded
author jackcurragh
date Wed, 18 May 2022 10:28:29 +0000
parents ca6a237895f3
children 3276016ac5b3
files get_chrom_sizes/calculating_chrom.sizes.py get_chrom_sizes/output
diffstat 2 files changed, 8 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/get_chrom_sizes/calculating_chrom.sizes.py	Wed May 18 10:24:56 2022 +0000
+++ b/get_chrom_sizes/calculating_chrom.sizes.py	Wed May 18 10:28:29 2022 +0000
@@ -13,7 +13,7 @@
 if fasta_source == 'builtin':
 	genome = builtin
 
-chromSizesoutput = open('output',"w")
+chromSizesoutput = open(output,"w")
 
 records = []
 record = False
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_chrom_sizes/output	Wed May 18 10:28:29 2022 +0000
@@ -0,0 +1,7 @@
+NC_003070.9	30427671
+NC_003071.7	19698289
+NC_003074.8	23459830
+NC_003075.7	18585056
+NC_003076.8	26975502
+NC_037304.1	367808
+NC_000932.1	154478