Mercurial > repos > jankanis > blast2html
annotate tool_dependencies.xml @ 86:463744384507 py2.6
add missing dependencies
author | Jan Kanis <jan.code@jankanis.nl> |
---|---|
date | Tue, 24 Jun 2014 11:20:24 +0200 |
parents | 2edb77030a9e |
children | 62aac637dd6c |
rev | line source |
---|---|
41
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
2 <tool_dependency> |
46
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
3 <package name="libxml2" version="2.9.1"> |
65
c546e759bf2a
depend on modified libxml2 that exports LD_LIBRARY_PATH
Jan Kanis <jan.code@jankanis.nl>
parents:
64
diff
changeset
|
4 <repository name="package_libxml2_2_9_1" owner="jankanis" prior_installation_required="True" |
c546e759bf2a
depend on modified libxml2 that exports LD_LIBRARY_PATH
Jan Kanis <jan.code@jankanis.nl>
parents:
64
diff
changeset
|
5 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="98807f0505f0" /> |
46
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
6 </package> |
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
7 |
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
8 <package name="libxslt" version="1.1.28"> |
48
49de6a204554
fix prior_installation_required flag
Jan Kanis <jan.code@jankanis.nl>
parents:
47
diff
changeset
|
9 <repository name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" |
46
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
10 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" /> |
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
11 </package> |
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
12 |
85
2edb77030a9e
re-include backed out revisions and update version numbers
Jan Kanis <jan.code@jankanis.nl>
parents:
84
diff
changeset
|
13 <package name="blast2html_venv" version="0.2"> |
41
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
14 <install version="1.0"> |
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
15 <actions> |
46
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
16 <action type="set_environment_for_install"> |
65
c546e759bf2a
depend on modified libxml2 that exports LD_LIBRARY_PATH
Jan Kanis <jan.code@jankanis.nl>
parents:
64
diff
changeset
|
17 <repository name="package_libxml2_2_9_1" owner="jankanis" |
c546e759bf2a
depend on modified libxml2 that exports LD_LIBRARY_PATH
Jan Kanis <jan.code@jankanis.nl>
parents:
64
diff
changeset
|
18 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="98807f0505f0"> |
46
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
19 <package name="libxml2" version="2.9.1" /> |
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
20 </repository> |
48
49de6a204554
fix prior_installation_required flag
Jan Kanis <jan.code@jankanis.nl>
parents:
47
diff
changeset
|
21 <repository name="package_libxslt_1_1_28" owner="devteam" |
46
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
22 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee"> |
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
23 <package name="libxslt" version="1.1.28" /> |
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
24 </repository> |
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
25 </action> |
85
2edb77030a9e
re-include backed out revisions and update version numbers
Jan Kanis <jan.code@jankanis.nl>
parents:
84
diff
changeset
|
26 |
2edb77030a9e
re-include backed out revisions and update version numbers
Jan Kanis <jan.code@jankanis.nl>
parents:
84
diff
changeset
|
27 <action type="setup_virtualenv"> |
2edb77030a9e
re-include backed out revisions and update version numbers
Jan Kanis <jan.code@jankanis.nl>
parents:
84
diff
changeset
|
28 lxml==3.3.5 |
2edb77030a9e
re-include backed out revisions and update version numbers
Jan Kanis <jan.code@jankanis.nl>
parents:
84
diff
changeset
|
29 jinja2==2.7.3 |
86 | 30 six==1.7.2 |
31 argparse==1.2.1 | |
85
2edb77030a9e
re-include backed out revisions and update version numbers
Jan Kanis <jan.code@jankanis.nl>
parents:
84
diff
changeset
|
32 </action> |
53
4217bb9cf1d3
depend on python 3; fix internal links with multiple iterations
Jan Kanis <jan.code@jankanis.nl>
parents:
51
diff
changeset
|
33 |
4217bb9cf1d3
depend on python 3; fix internal links with multiple iterations
Jan Kanis <jan.code@jankanis.nl>
parents:
51
diff
changeset
|
34 <action type="set_environment"> |
64
b68c04bf6912
work around missing ld library path for libxml
Jan Kanis <jan.code@jankanis.nl>
parents:
63
diff
changeset
|
35 <!-- To find shared libraries such as libssl or libxml2 --> |
57
159989f6bfa6
depend on new python3; set LD_LIBRARY_PATH
Jan Kanis <jan.code@jankanis.nl>
parents:
55
diff
changeset
|
36 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable> |
64
b68c04bf6912
work around missing ld library path for libxml
Jan Kanis <jan.code@jankanis.nl>
parents:
63
diff
changeset
|
37 <!-- libxml2 doesn't actually export its own LD_LIBRARY_PATH --> |
b68c04bf6912
work around missing ld library path for libxml
Jan Kanis <jan.code@jankanis.nl>
parents:
63
diff
changeset
|
38 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LIBXML_ROOT_PATH]/lib</environment_variable> |
46
518580263e96
change tool_dependencies.xml
Jan Kanis <jan.code@jankanis.nl>
parents:
45
diff
changeset
|
39 </action> |
41
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
40 </actions> |
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
41 </install> |
85
2edb77030a9e
re-include backed out revisions and update version numbers
Jan Kanis <jan.code@jankanis.nl>
parents:
84
diff
changeset
|
42 <readme>A Python 2 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme> |
41
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
43 </package> |
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
44 |
637f96ffb9a4
more dependency updates, now including the python package dependencies
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
45 </tool_dependency> |