Mercurial > repos > jankanis > package_python3_4
annotate tool_dependencies.xml @ 8:a468d4d76af3 draft
Debugging revision, do not install!
| author | jankanis |
|---|---|
| date | Sat, 24 May 2014 13:41:15 -0400 |
| parents | 34e257e3aceb |
| children | d3ea5f1b4d79 |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="openssl" version="1.0.1g"> | |
| 7 | 4 <repository changeset_revision="23ebff671a20" name="package_openssl" owner="jankanis" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 | |
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7 <package name="sqlite" version="3.8.3"> |
| 7 | 8 <repository changeset_revision="706b1f3b1fc0" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
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9 </package> |
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11 <package name="gdbm" version="1.11"> |
| 7 | 12 <repository changeset_revision="15e7435c2663" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
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13 </package> |
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| 0 | 16 <package name="python3" version="3.4.1"> |
| 17 <install version="1.0"> | |
| 18 <actions> | |
| 1 | 19 <action type="download_by_url">https://www.python.org/ftp/python/3.4.1/Python-3.4.1.tgz</action> |
| 0 | 20 <action type="set_environment_for_install"> |
| 7 | 21 <repository changeset_revision="23ebff671a20" name="package_openssl" owner="jankanis" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 0 | 22 <package name="openssl" version="1.0.1g" /> |
| 23 </repository> | |
| 7 | 24 <repository changeset_revision="706b1f3b1fc0" name="package_sqlite_3_8_3" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
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25 <package name="sqlite" version="3.8.3" /> |
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26 </repository> |
| 7 | 27 <repository changeset_revision="15e7435c2663" name="package_gdbm_1_11" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
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28 <package name="gdbm" version="1.11" /> |
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29 </repository> |
| 0 | 30 </action> |
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31 |
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32 <action type="set_environment"> |
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33 <environment_variable action="set_to" name="CFLAGS">$CFLAGS -I$SQLITE_ROOT_DIR/lib -I$GDBM_ROOT_PATH/lib -I$OPENSSL_ROOT_DIR/lib</environment_variable> |
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34 <environment_variable action="set_to" name="CPPFLAGS">$CPPFLAGS -I$SQLITE_ROOT_DIR/lib -I$GDBM_ROOT_PATH/lib -I$OPENSSL_ROOT_DIR/lib</environment_variable> |
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35 <environment_variable action="set_to" name="LDFLAGS">$LDFLAGS -L$SQLITE_ROOT_DIR/include -L$GDBM_ROOT_PATH/include -L$OPENSSL_ROOT_DIR/include</environment_variable> |
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36 </action> |
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37 |
| 8 | 38 <!-- We need a shell command here because the variables set above are not passed to type="autotool" commands --> |
| 39 <action type="shell_command">bash </dev/tty >/dev/tty 2>&1 && ./configure --prefix=$INSTALL_DIR --with-ensurepip --enable-loadable-sqlite-extensions</action> | |
| 40 <action type="make_install" /> | |
| 1 | 41 <action type="set_environment"> |
| 42 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
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43 <!-- empty PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path --> |
| 1 | 44 <environment_variable action="set_to" name="PYTHONPATH" /> |
| 45 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> | |
| 4 | 46 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> |
| 1 | 47 </action> |
| 0 | 48 </actions> |
| 49 </install> | |
| 50 | |
| 51 <readme> | |
| 52 Python 3.4.1. Configured with the default settings, using --prefix=$INSTALL_DIR. | |
| 53 | |
| 54 Python as of version 3.3 includes a built-in virtual environment manager. To create a python 3 virtual env, include the following actions in your tool_dependencies.xml: | |
| 55 | |
| 56 <action type="set_environment_for_install"> | |
| 1 | 57 <repository name="python3" owner="jankanis"> |
| 0 | 58 <package name="python3" version="3.4.1" /> |
| 1 | 59 </repository> |
| 0 | 60 </action> |
| 61 <action type="shell_command"> | |
| 1 | 62 # Unset any saved environment settings from parent virtual |
| 63 # environments, e.g. for python 2 or if Galaxy itself is running | |
| 64 # from within a virtual environment. | |
| 65 unset _OLD_VIRTUAL_PATH; unset _OLD_VIRTUAL_PYTHONHOME | |
| 3 | 66 pyvenv {{\$MY_PACKAGE_NAME}} |
| 67 . {{\$MY_PACKAGE_NAME}}/bin/activate | |
| 68 pip3 install {{\$PYTHON-PACKAGE}} | |
| 0 | 69 </action> |
| 70 <action type="set_environment"> | |
| 3 | 71 <environment_variable name="PYTHONPATH" action="prepend_to">\$INSTALL_DIR/lib/python3.4/site-packages</environment_variable> |
| 0 | 72 </action> |
| 73 | |
| 74 </readme> | |
| 75 | |
| 76 </package> | |
| 77 </tool_dependency> |