Mercurial > repos > jbarberoaparicio > roary

changeset 18:34ccf9b4a504 draft

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Uploaded
author jbarberoaparicio
date Wed, 17 Apr 2019 08:16:55 -0400
parents 112692d7c34a
children a046056255ed
files roary/myTools/roary_tool.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/roary/myTools/roary_tool.xml	Wed Apr 17 08:11:26 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Wed Apr 17 08:16:55 2019 -0400
@@ -8,7 +8,7 @@
     <command detect_errors="exit_code"><![CDATA[
         
         #for $counter, $gff in enumerate($gff_input.gffs)
-          cp $gff ${gff}.gff &&
+          cp $gff sample${gff%%.*}.gff &&   
         #end for
                 
         roary