Mercurial > repos > jbarberoaparicio > roary

changeset 13:9c482532a3e0 draft

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Uploaded
author jbarberoaparicio
date Wed, 17 Apr 2019 05:51:25 -0400
parents 057fe2ecc2ed
children 0d73c38f61b3
files roary/myTools/roary_tool.xml
diffstat 1 files changed, 2 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/roary/myTools/roary_tool.xml	Wed Apr 17 05:46:56 2019 -0400
+++ b/roary/myTools/roary_tool.xml	Wed Apr 17 05:51:25 2019 -0400
@@ -7,10 +7,7 @@
     
     <command detect_errors="exit_code"><![CDATA[
         
-        #for $counter, $gff in enumerate($gff_input.gffs)
-          echo $gff &&
-        #end for
-                
+               
         roary
           -f out 
           -p \${GALAXY_SLOTS:-1}
@@ -23,7 +20,7 @@
           -t '$advanced.trans_tab'
           -iv '$advanced.mcl'
           
-          sample*.gff
+          *.gff
           
     ]]></command>