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1 <tool id="zinbra123" name="Zinbra123" version="0.0.1">
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0
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2 <description>ChIP-Seq enrichment</description>
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3 <requirements>
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4 <requirement type="package" version="0.0.1">epigenome</requirement>
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5 </requirements>
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6 <stdio>
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7 <!-- Wrapper ensures anything other than zero is an error -->
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8 <exit_code range="1:" />
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9 <exit_code range=":-1" />
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10 </stdio>
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11 <command interpreter="python">
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12 zinbra.py "${genome}" "${bed}" "${bin}" "${fdr}"
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13 </command>
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14 <inputs>
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15 <param name="bed" type="data" format="bed" label="Aligned reads" description="BED Aligned reads to process" />
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1
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16 <param name="genome" type="data" format="fasta" label="Genome build" description="Genome build reference" />
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0
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17 <param name="bin" size="5" type="integer" value="200" label="Bin size" />
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18 <param name="fdr" size="5" type="float" value="0.0001" label="FDR" />
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19 </inputs>
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20 <outputs>
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21 <data name="result" format="bed" label="result.bed" />
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22 </outputs>
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23 <help>
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24 Zinbra is a tool for analyzing and comparing ChIP-Seq data using Zero Inflated Negative Binomial Restricted Algorithm.
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25 https://github.com/JetBrains-Research/zinbra
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26 </help>
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27 </tool>
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