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annotate rnaseq/cutadapt/test-data/gene_bed_maf_to_fasta_out.fasta @ 11:a712b378e090

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cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
parents
children
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11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
1 >hg17.BC028629
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
2 ATGATAATCACACAAACAAGTCACTGTTACATGACCAGCCTTGGGATTCTTTTCCTGATTAATATTCTCCCTGGAACCACTGGTCAAGGGGAATCAAGACGACAAGAACCCGGGGACTTTGTGAAGCAGGACATTGGCGGGCTGTCTCCTAAGCATGCCCCAGATATTCCTGATGACAGCACTGACAACATCACTATCTTCACCAGAATCTTGGATCGTCTTCTGGACGGCTATGACAACCGGCTGCGACCTGGGCTTGGAGATGCAGTGACTGAAGTGAAGACTGACATCTACGTGACCAGTTTTGGCCCTGTGTCAGACACTGACATGGAGTACACTATTGATGTATTTTTTCGGCAGACATGGCATGATGAAAGACTGAAATTTGATGGCCCCATGAAGATCCTTCCACTGAACAATCTCCTGGCTAGTAAGATCTGGACACCGGACACCTTCTTCCACAATGGCAAGAAATCAGTGGCTCATAACATGACCACGCCCAACAAGCTGCTCAGATTGGTGGACAACGGAACCCTCCTCTATACAATGAGGTTAACAATTCATGCTGAGTGTCCCATGCATTTGGAAGATTTTCCCATGGATGTGCATGCCTGCCCACTGAAGTTTGGAAGCTATGCCTATACAACAGCTGAAGTGGTTTATTCTTGGACTCTCGGAAAGAACAAATCCGTGGAAGTGGCACAGGATGGTTCTCGCTTGAACCAGTATGACCTTTTGGGCCATGTTGTTGGGACAGAGATAATCCGGTCTAGTACAGGAGAATATGTCGTCATGACAACCCACTTCCATCTCAAGCGAAAAATTGGCTACTTTGTGATCCAGACCTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTGTCGTTCTGGCTCAACAGAGAGTCTGTTCCTGCCCGTACAGTCTTTGGTGTCACCACTGTGCTTACCATGACCACCTTGAGTATCAGTGCCAGAAATTCCTTACCTAAAGTGGCATATGCGACGGCCATGGACTGGTTCATAGCCGTCTGTTATGCCTTTGTATTTTCTGCACTGATTGAATTTGCCACTGTCAACTATTTCACCAAGCGGAGTTGGGCTTGGGAAGGCAAGAAGGTGCCAGAGGCCCTGGAGATGAAGAAGAAAACACCAGCAGCCCCAGCAAAGAAAACCAGCACTACCTTCAACATCGTGGGGACCACCTATCCCATCAACCTGGCCAAGGACACTGAATTTTCCACCATCTCCAAGGGCGCTGCTCCCAGTGCCTCCTCAACCCCAACAATCATTGCTTCACCCAAGGCCACCTACGTGCAGGACAGCCCGACTGAGACCAAGACCTACAACAGTGTCAGCAAGGTTGACAAAATTTCCCGCATCATCTTTCCTGTGCTCTTTGCCATATTCAATCTGGTCTATTGGGCCACATATGTCAACCGGGAGTCAGCTATCAAGGGCATGATCCGCAAACAGTAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
3 >canFam1.BC028629
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
4 ATGATAGTCACACAAATGAGTCACTTCTACACAATCATCCTTGGGCTTCTTTTCCTGATTAATATTTTTCCTGGAACAACTGGCCAAGGGGAATCAAGACGACAAGAACCTGGGGATTTTGTGAAGCAGGATATTGGCGGACTCTCTCCTAAGCATGCCCCAGATATTCCTGATGACAGCACTGACAACATCACTATATTCACCAGAATCTTAGATCGTCTTCTGGATGGCTATGACAACCGACTACGACCTGGGCTTGGAGATGCGGTGACTGAAGTGAAGACTGATATCTATGTGACCAGTTTTGGCCCCGTGTCAGACACTGACATGGAGTACACCATTGATGTATTTTTTCGACAGACATGGCATGATGAAAGACTAAAATTTGATGGACCCATGAAGATTCTTCCACTGAACAATCTCCTGGCTAGTAAGATCTGGACCCCTGACACCTTCTTTCATAATGGCAAGAAATCAGTAGCCCATAACATGACCACACCTAACAAGCTGCTCAGACTGGTGGACAATGGAACCCTCCTCTACACAATGAGGTTAACAATTCATGCTGAGTGCCCCATGCATTTGGAAGATTTTCCTATGGATGTACATGCCTGCCCACTGAAGTTTGGAAGCTATGCCTATACAACAGCTGAAGTGGTTTATTCCTGGACTCTTGGGAAGAACAAATCTGTGGAAGTAGCGCAGGACGGCTCCCGCCTGAATCAGTATGACCTGCTGGGCCATGTTGTTGGGACAGAGATAATCCGGTCTAGTACAGGAGAATATGTCGTCATGACAACCCACTTTCATCTCAAACGAAAAATTGGCTACTTTGTGATCCAGACTTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTGTCTTTCTGGCTCAACAGAGAATCTGTCCCTGCCCGCACGGTCTTTGGTGTCACCACTGTTCTCACCATGACCACTTTGAGTATCAGTGCCAGAAACTCCTTACCTAAAGTGGCATACGCGACGGCCATGGATTGGTTCATAGCCGTCTGTTATGCCTTTGTATTTTCTGCGCTGATTGAATTTGCCACTGTTAACTACTTCACCAAGCGGAGTTGGGCTTGGGAAGGCAAGAAGGTGCCGGAGGCCCTGGAGATGAAGAAGAAAACACCAGCAGCCCCAACAAAGAAAACCAGCACCACCTTCAACATCGTGGGAACCACCTATCCCATCAATCTGGCCAAGGACACTGAGTTCTCTACCATCTCCAAGGGCGCTGCTCCCAGTGCCTCCTCAACCCCAACAATTATTGCTTCACCCAAGACCACCTACGTGCAGGACATCCCGACTGAGACCAAGACCTACAACAGTGTCAGCAAGGTTGACAAAATTTCCCGCATCATCTTTCCTGTGCTTTTTGCCATTTTTAATCTGGTCTACTGGGCCACCTATGTCAACCGGGAGTCAGCTATCAAGGGCATGATCCGCAAACACTAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
5 >mm5.BC028629
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
6 ATGATAATCACACAAATGTGGCACTTTTATGTGACCAGAGTTGTACTTCTTCTCCTGATTAGTATTCTCCCTGGAACCACTAGCCAAGGGGAATCAAGACGACAAGAACCTGGGGACTTTGTGAAACAAGATATTGGAGGACTCTCTCCCAAGCATGCCCCAGATATTCCTGACGATAGTACAGATAATATCACTATCTTCACTAGAATCTTGGATCGGCTTTTGGATGGCTATGATAACCGGCTTCGACCTGGACTTGGAGATGCAGTGACTGAAGTGAAGACAGACATCTATGTGACCAGTTTTGGCCCTGTGTCAGACACTGATATGGAATATACTATTGATGTATTTTTTAGACAGACATGGCATGATGAAAGACTGAAATTTGATGGACCAATGAAGATCCTTCCACTGAACAATCTTCTGGCTAGTAAGATATGGACTCCTGATACCTTCTTCCACAATGGTAAAAAATCAGTGGCTCACAATATGACCACACCCAACAAGCTGCTCAGACTGGTAGATAATGGGACCCTCCTCTATACAATGAGGTTAACAATACACGCTGAATGCCCCATGCATTTGGAAGATTTCCCCATGGATGTGCATGCCTGCCCACTGAAGTTTGGAAGCTATGCCTATACCAAAGCTGAAGTAATTTATTCTTGGACTCTTGGGAAGAACAAATCTGTGGAAGTAGCACAGGATGGCTCACGCCTGAATCAGTATGACTTGCTTGGCCATGTTGTTGGGACAGAGATAATCCGGTCTAGTACAGGAGAATATGTCGTCATGACAACCCACTTTCATCTGAAGAGAAAAATTGGCTACTTTGTCATCCAGACCTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTGTCTTTCTGGCTTAATAGAGAATCTGTCCCTGCCCGCACAGTCTTTGGTGTCACCACTGTTCTCACCATGACCACCTTGAGTATCAGTGCCAGAAACTCTTTACCTAAAGTGGCATACGCGACGGCCATGGACTGGTTCATAGCCGTCTGTTATGCCTTTGTATTTTCTGCACTGATTGAATTTGCTACTGTCAACTACTTCACCAAGCGGAGTTGGGCTTGGGAAGGCAAGAAGGTACCAGAGGCCCTGGAGATGAAGAAGAAAACACCAGCAGCTCCAACAAAGAAAA---ACACCACCTTCAACATAGTGGGTACCACCTATCCTATCAATCTGGCCAAGGATACTGAGTTCTCCACCATCTCCAAGGCTGCTGCTCCCAGTGCTTCTTCAACTCCAACAGCGATTGCTTCACCCAAGGCTACTTATGTGCAAGACAGTCCTGCTGAGACCAAGACCTACAACAGTGTCAGCAAGGTTGACAAAATTTCCCGCATCATCTTCCCTGTGCTCTTTGCCATATTCAATCTTGTCTATTGGGCTACATATGTGAACCGGGAATCAGCTATCAAGGGCATGATCCGCAAACAGTAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
7 >panTro1.BC028629
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
8 ATGATAATCACACAAACGAGTCACTGTTACATGACCAGCCTTGGGATTCTTTTCCTGATTAATATTCTCCCTGGAACCACTGGTCAAGGGGAATCAAGACGACAAGAACCTGGGGACTTTGTGAAGCAGGACATTGGCGGGCTGTCTCCTAAGCATGCCCCAGATATTCCTGATGACAGCACTGACAACATCACTATCTTCACCAGAATCTTGGATCGTCTTCTGGACGGCTATGACAACCGGCTGCGACCTGGGCTTGGAG--------------------------------------------------------------------GAGTACACTATTGATGTATTTTTTCGGCAGACATGGCATGATGAAAGACTGAAATTTGATGGCCCCATGAAGATCCTTCCACTGAACAATCTCCTGGCTAGTAAGATCTGGACACCTGACACCTTCTTCCACAATGGCAAGAAATCGGTGGCTCATAACATGACCACGCCCAACAAGCTGCTCAGATTGGTGGACAACGGAACCCTCCTCTATACAATGAGGTTAACAATTCATGCTGAGTGTCCCATGCATTTGGAAGATTTTCCCATGGATGTGCATGCCTGCCCACTGAAGTTTGGAAGCTATGCCTATACAACAGCTGAAGTGGTTTATTCTTGGACTCTCGGAAAGAACAAATCCGTGGAAGTGGCACAGGATGGTTCTCGCTTGAACCAGTATGACCTTTTGGGCCATGTTGTTGGGACAGAGATAATCCGGTCTAGTACAGGAGAATATGTCGTCATGACAACCCACTTCCATCTCAAGCGAAAAATTGGCTACTTTGTGATCCAGACCTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTGTCGTTCTGGCTCAACAGAGAGTCTGTTCCTGCCCGTACAGTCTTTGGTGTCACCACTGTGCTTACCATGACCACCTTGAGTATCAGTGCCAGAAATTCCTTACCTAAAGTGGCATATGCGACGGCCATGGACTGGTTCATAGCCGTCTGTTATGCCTTTGTATTTTCTGCACTGATTGAATTTGCCACTGTCAACTATTTCACCAAGCGGAGTTGGGCTTGGGAAGGCAAGAAGGTGCCAGAGGCCCTGGAGATGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
9 >rn3.BC028629
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
10 ATGATAACCACACAAATGTGGCACTTCTATGTGACCAGAGTTGGACTTCTTCTTCTGATTAGTATTCTACCTGGAACCACTGGCCAAGGGGAGTCAAGACGACAAGAACCTGGGGACTTTGTGAAGCAAGATATTGGAGGCCTCTCTCCCAAGCATGCCCCAGATATTCCTGACGATAGTACAGATAACATCACTATCTTCACTAGAATCTTGGATCGGCTTCTGGATGGCTATGACAACCGACTGCGACCTGGGCTTGGAGATGCAGTGACTGAAGTGAAGACAGATATCTATGTGACCAGTTTTGGCCCTGTGTCAGACACTGATATGGAATATACTATTGATGTGTTTTTTAGACAGACATGGCATGATGAAAGACTGAAATTTGATGGACCAATGAAGATCCTTCCACTGAATAATCTTCTGGCTAGTAAGATATGGACTCCAGATACCTTCTTCCACAACGGTAAAAAATCAGTGGCTCACAATATGACCACACCCAACAAGCTGCTCAGACTGGTAGACAATGGGACCCTCCTCTATACAATGAGGTTAACAATACATGCTGAATGCCCTATGCATTTAGAAGATTTCCCCATGGATGTGCATGCCTGTCCACTGAAGTTTGGAAGCTATGCCTATACCAAAGCTGAAGTAATTTATTCTTGGACTCTTGGGAAGAACAAATCTGTGGAAGTAGCTCAGGATGGCTCACGCCTGAATCAGTATGACTTGCTTGGTCATGTTGTTGGGACAGAGATAATCCGGTCTAGTACAGGAGAATATGTCGTCATGACAACCCACTTTCATCTGAAGAGAAAAATTGGCTACTTTGTCATCCAGACCTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTTTCTTTCTGGCTTAATAGAGAATCTGTCCCTGCTCGCACAGTCTTTGGTGTCACCACTGTTCTCACCATGACCACCTTGAGTATCAGTGCCAGAAACTCTTTACCTAAAGTGGCATACGCGACGGCCATGGACTGGTTCATAGCCGTCTGTTATGCCTTTGTATTTTCTGCACTGATTGAATTTGCTACTGTCAACTACTTCACCAAGCGAAGTTGGGCTTGGGAAGGCAAGAAGGTACCAGAGGCCCTGGAGATGAAG----------------------------------------------------------CCAACTACGCCCCGAATCTTTCCAAAGATCCTGTCCTCTCTACCATTTCCAAAAGTGCAACT---------------ACTCCAGAACCAA-------ACAAGAAGCCAG--------AGAACAAGCCAGCCGAAGCCAAGACTTTCAACAGTGTCAGCAAAATCGACAGAATGTCTAGAATAGTGTTCCCGGTTCTGTTTGGTACTTTTAATTTAGTTTACTGGGCTACGTATTTAAACCGGGAGCCTG-TATTAGGGG-------------------
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
11