Mercurial > repos > jjkoehorst > sapp

comparison rnaseq/cutadapt/test-data/gff2bed_out3.bed @ 11:a712b378e090

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cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
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comparison
equal deleted inserted replaced
10:3378d12591ea 11:a712b378e090
1 ctgA 22131 24633 my_feature 0 +
2 ctgA 46989 48410 my_feature 0 -
3 ctgA 44704 47713 my_feature 0 -
4 ctgA 36648 40440 my_feature 0 -
5 ctgA 23071 23185 my_feature 0 +
6 ctgA 37241 38653 my_feature 0 +
7 ctgA 37496 40559 motif 0 -
8 ctgA 36033 38167 my_feature 0 +
9 ctgA 28331 30033 motif 0 -
10 ctgA 4714 5968 my_feature 0 -
11 ctgA 48252 48366 motif 0 +
12 ctgA 999 20000 BAC 0 +
13 ctgA 19499 20000 right_end_read 0 -
14 ctgA 999 1500 left_end_read 0 +
15 ctgA 13800 14007 motif 0 -
16 ctgA 1049 9000 coding 0 +
17 ctgA 1200 1500 CDS 0 +
18 ctgA 2999 3902 CDS 0 +
19 ctgA 4999 5500 CDS 0 +
20 ctgA 6999 7608 CDS 0 +
21 ctgA 1049 9000 processed_transcript 0 +
22 ctgA 1049 1200 5'-UTR 0 +
23 ctgA 7608 9000 3'-UTR 0 +
24 ctgA 5409 7503 match 0 -
25 ctgA 6999 7503 HSP 0 -
26 ctgA 5409 5500 HSP 0 -
27 ctgA 46011 48851 motif 0 +
28 ctgA 6884 8999 match 0 -
29 ctgA 8305 8999 HSP 0 -
30 ctgA 8054 8080 HSP 0 -
31 ctgA 7409 7737 HSP 0 -
32 ctgA 6884 7241 HSP 0 -
33 ctgA 13279 16394 my_feature 0 +
34 ctgA 29770 32937 match 0 +
35 ctgA 29770 29942 HSP 0 +
36 ctgA 30041 30340 HSP 0 +
37 ctgA 30809 31307 HSP 0 +
38 ctgA 31760 31984 HSP 0 +
39 ctgA 32373 32937 HSP 0 +
40 ctgA 36615 37227 match 0 -
41 ctgA 37207 37227 HSP 0 -
42 ctgA 36615 37057 HSP 0 -
43 ctgA 11910 15561 motif 0 +
44 ctgA 1049 3202 match 0 +
45 ctgA 1049 1500 HSP 0 +
46 ctgA 2999 3202 HSP 0 +
47 ctgA 15395 16159 motif 0 +
48 ctgA 1149 7200 match 0 +
49 ctgA 1149 1500 HSP 0 +
50 ctgA 4999 5500 HSP 0 +
51 ctgA 6999 7200 HSP 0 +
52 ctgA 1049 7300 match 0 +
53 ctgA 1049 1500 HSP 0 +
54 ctgA 4999 5500 HSP 0 +
55 ctgA 6999 7300 HSP 0 +
56 ctgA 19156 22915 my_feature 0 -
57 ctgA 7999 9000 match 0 -
58 ctgA 7999 9000 HSP 0 -
59 ctgA 28341 28447 motif 0 -
60 ctgA 17666 17690 motif 0 +
61 ctgA 44400 45925 trace 0 +
62 ctgA 26121 34466 match 0 +
63 ctgA 26121 26126 HSP 0 +
64 ctgA 26496 26869 HSP 0 +
65 ctgA 27200 27325 HSP 0 +
66 ctgA 27371 27433 HSP 0 +
67 ctgA 27564 27565 HSP 0 +
68 ctgA 27812 28091 HSP 0 +
69 ctgA 28092 28201 HSP 0 +
70 ctgA 28328 28377 HSP 0 +
71 ctgA 28828 29194 HSP 0 +
72 ctgA 29516 29702 HSP 0 +
73 ctgA 29712 30061 HSP 0 +
74 ctgA 30328 30774 HSP 0 +
75 ctgA 30807 31306 HSP 0 +
76 ctgA 31515 31729 HSP 0 +
77 ctgA 31752 32154 HSP 0 +
78 ctgA 32594 32696 HSP 0 +
79 ctgA 32891 32901 HSP 0 +
80 ctgA 33126 33388 HSP 0 +
81 ctgA 33438 33443 HSP 0 +
82 ctgA 33758 34209 HSP 0 +
83 ctgA 34400 34466 HSP 0 +
84 ctgA 0 50000 contig 0 +
85 ctgA 41136 47829 match 0 -
86 ctgA 47448 47829 HSP 0 -
87 ctgA 46815 46992 HSP 0 -
88 ctgA 46091 46318 HSP 0 -
89 ctgA 45789 46022 HSP 0 -
90 ctgA 45230 45488 HSP 0 -
91 ctgA 44762 45030 HSP 0 -
92 ctgA 44064 44556 HSP 0 -
93 ctgA 43394 43811 HSP 0 -
94 ctgA 42889 43270 HSP 0 -
95 ctgA 42056 42474 HSP 0 -
96 ctgA 41753 41948 HSP 0 -
97 ctgA 41136 41318 HSP 0 -
98 ctgA 12530 15870 match 0 +
99 ctgA 12530 12895 HSP 0 +
100 ctgA 13121 13449 HSP 0 +
101 ctgA 13451 13745 HSP 0 +
102 ctgA 13907 13965 HSP 0 +
103 ctgA 13997 14488 HSP 0 +
104 ctgA 14563 14899 HSP 0 +
105 ctgA 15184 15276 HSP 0 +
106 ctgA 15638 15736 HSP 0 +
107 ctgA 15744 15870 HSP 0 +
108 ctgA 7499 8000 match 0 -
109 ctgA 7499 8000 HSP 0 -
110 ctgA 1299 9000 coding 0 +
111 ctgA 3300 3902 CDS 0 +
112 ctgA 4999 5500 CDS 0 +
113 ctgA 6999 7600 CDS 0 +
114 ctgA 1299 9000 processed_transcript 0 +
115 ctgA 1299 1500 5'-UTR 0 +
116 ctgA 2999 3300 5'-UTR 0 +
117 ctgA 7600 9000 3'-UTR 0 +
118 ctgA 26502 35904 match 0 -
119 ctgA 35641 35904 HSP 0 -
120 ctgA 35332 35507 HSP 0 -
121 ctgA 34604 34983 HSP 0 -
122 ctgA 34243 34313 HSP 0 -
123 ctgA 33437 33868 HSP 0 -
124 ctgA 33052 33325 HSP 0 -
125 ctgA 32207 32680 HSP 0 -
126 ctgA 32009 32057 HSP 0 -
127 ctgA 31420 31817 HSP 0 -
128 ctgA 31231 31236 HSP 0 -
129 ctgA 30464 30798 HSP 0 -
130 ctgA 30107 30216 HSP 0 -
131 ctgA 29512 29647 HSP 0 -
132 ctgA 28776 29058 HSP 0 -
133 ctgA 28224 28316 HSP 0 -
134 ctgA 27886 28076 HSP 0 -
135 ctgA 27447 27860 HSP 0 -
136 ctgA 27171 27185 HSP 0 -
137 ctgA 26502 26799 HSP 0 -
138 ctgA 49405 50000 match 0 +
139 ctgA 49405 49476 HSP 0 +
140 ctgA 49761 50000 HSP 0 +
141 ctgA 1049 9000 gene 0 +
142 ctgA 33324 35791 motif 0 +
143 ctgA 31784 32359 match 0 +
144 ctgA 31784 31939 HSP 0 +
145 ctgA 32328 32359 HSP 0 +