--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaseq/cutadapt/test-data/gff2bed_out3.bed	Sat Feb 21 16:33:42 2015 +0100
@@ -0,0 +1,145 @@
+ctgA	22131	24633	my_feature	0	+
+ctgA	46989	48410	my_feature	0	-
+ctgA	44704	47713	my_feature	0	-
+ctgA	36648	40440	my_feature	0	-
+ctgA	23071	23185	my_feature	0	+
+ctgA	37241	38653	my_feature	0	+
+ctgA	37496	40559	motif	0	-
+ctgA	36033	38167	my_feature	0	+
+ctgA	28331	30033	motif	0	-
+ctgA	4714	5968	my_feature	0	-
+ctgA	48252	48366	motif	0	+
+ctgA	999	20000	BAC	0	+
+ctgA	19499	20000	right_end_read	0	-
+ctgA	999	1500	left_end_read	0	+
+ctgA	13800	14007	motif	0	-
+ctgA	1049	9000	coding	0	+
+ctgA	1200	1500	CDS	0	+
+ctgA	2999	3902	CDS	0	+
+ctgA	4999	5500	CDS	0	+
+ctgA	6999	7608	CDS	0	+
+ctgA	1049	9000	processed_transcript	0	+
+ctgA	1049	1200	5'-UTR	0	+
+ctgA	7608	9000	3'-UTR	0	+
+ctgA	5409	7503	match	0	-
+ctgA	6999	7503	HSP	0	-
+ctgA	5409	5500	HSP	0	-
+ctgA	46011	48851	motif	0	+
+ctgA	6884	8999	match	0	-
+ctgA	8305	8999	HSP	0	-
+ctgA	8054	8080	HSP	0	-
+ctgA	7409	7737	HSP	0	-
+ctgA	6884	7241	HSP	0	-
+ctgA	13279	16394	my_feature	0	+
+ctgA	29770	32937	match	0	+
+ctgA	29770	29942	HSP	0	+
+ctgA	30041	30340	HSP	0	+
+ctgA	30809	31307	HSP	0	+
+ctgA	31760	31984	HSP	0	+
+ctgA	32373	32937	HSP	0	+
+ctgA	36615	37227	match	0	-
+ctgA	37207	37227	HSP	0	-
+ctgA	36615	37057	HSP	0	-
+ctgA	11910	15561	motif	0	+
+ctgA	1049	3202	match	0	+
+ctgA	1049	1500	HSP	0	+
+ctgA	2999	3202	HSP	0	+
+ctgA	15395	16159	motif	0	+
+ctgA	1149	7200	match	0	+
+ctgA	1149	1500	HSP	0	+
+ctgA	4999	5500	HSP	0	+
+ctgA	6999	7200	HSP	0	+
+ctgA	1049	7300	match	0	+
+ctgA	1049	1500	HSP	0	+
+ctgA	4999	5500	HSP	0	+
+ctgA	6999	7300	HSP	0	+
+ctgA	19156	22915	my_feature	0	-
+ctgA	7999	9000	match	0	-
+ctgA	7999	9000	HSP	0	-
+ctgA	28341	28447	motif	0	-
+ctgA	17666	17690	motif	0	+
+ctgA	44400	45925	trace	0	+
+ctgA	26121	34466	match	0	+
+ctgA	26121	26126	HSP	0	+
+ctgA	26496	26869	HSP	0	+
+ctgA	27200	27325	HSP	0	+
+ctgA	27371	27433	HSP	0	+
+ctgA	27564	27565	HSP	0	+
+ctgA	27812	28091	HSP	0	+
+ctgA	28092	28201	HSP	0	+
+ctgA	28328	28377	HSP	0	+
+ctgA	28828	29194	HSP	0	+
+ctgA	29516	29702	HSP	0	+
+ctgA	29712	30061	HSP	0	+
+ctgA	30328	30774	HSP	0	+
+ctgA	30807	31306	HSP	0	+
+ctgA	31515	31729	HSP	0	+
+ctgA	31752	32154	HSP	0	+
+ctgA	32594	32696	HSP	0	+
+ctgA	32891	32901	HSP	0	+
+ctgA	33126	33388	HSP	0	+
+ctgA	33438	33443	HSP	0	+
+ctgA	33758	34209	HSP	0	+
+ctgA	34400	34466	HSP	0	+
+ctgA	0	50000	contig	0	+
+ctgA	41136	47829	match	0	-
+ctgA	47448	47829	HSP	0	-
+ctgA	46815	46992	HSP	0	-
+ctgA	46091	46318	HSP	0	-
+ctgA	45789	46022	HSP	0	-
+ctgA	45230	45488	HSP	0	-
+ctgA	44762	45030	HSP	0	-
+ctgA	44064	44556	HSP	0	-
+ctgA	43394	43811	HSP	0	-
+ctgA	42889	43270	HSP	0	-
+ctgA	42056	42474	HSP	0	-
+ctgA	41753	41948	HSP	0	-
+ctgA	41136	41318	HSP	0	-
+ctgA	12530	15870	match	0	+
+ctgA	12530	12895	HSP	0	+
+ctgA	13121	13449	HSP	0	+
+ctgA	13451	13745	HSP	0	+
+ctgA	13907	13965	HSP	0	+
+ctgA	13997	14488	HSP	0	+
+ctgA	14563	14899	HSP	0	+
+ctgA	15184	15276	HSP	0	+
+ctgA	15638	15736	HSP	0	+
+ctgA	15744	15870	HSP	0	+
+ctgA	7499	8000	match	0	-
+ctgA	7499	8000	HSP	0	-
+ctgA	1299	9000	coding	0	+
+ctgA	3300	3902	CDS	0	+
+ctgA	4999	5500	CDS	0	+
+ctgA	6999	7600	CDS	0	+
+ctgA	1299	9000	processed_transcript	0	+
+ctgA	1299	1500	5'-UTR	0	+
+ctgA	2999	3300	5'-UTR	0	+
+ctgA	7600	9000	3'-UTR	0	+
+ctgA	26502	35904	match	0	-
+ctgA	35641	35904	HSP	0	-
+ctgA	35332	35507	HSP	0	-
+ctgA	34604	34983	HSP	0	-
+ctgA	34243	34313	HSP	0	-
+ctgA	33437	33868	HSP	0	-
+ctgA	33052	33325	HSP	0	-
+ctgA	32207	32680	HSP	0	-
+ctgA	32009	32057	HSP	0	-
+ctgA	31420	31817	HSP	0	-
+ctgA	31231	31236	HSP	0	-
+ctgA	30464	30798	HSP	0	-
+ctgA	30107	30216	HSP	0	-
+ctgA	29512	29647	HSP	0	-
+ctgA	28776	29058	HSP	0	-
+ctgA	28224	28316	HSP	0	-
+ctgA	27886	28076	HSP	0	-
+ctgA	27447	27860	HSP	0	-
+ctgA	27171	27185	HSP	0	-
+ctgA	26502	26799	HSP	0	-
+ctgA	49405	50000	match	0	+
+ctgA	49405	49476	HSP	0	+
+ctgA	49761	50000	HSP	0	+
+ctgA	1049	9000	gene	0	+
+ctgA	33324	35791	motif	0	+
+ctgA	31784	32359	match	0	+
+ctgA	31784	31939	HSP	0	+
+ctgA	32328	32359	HSP	0	+