<tool id="DAnnotation" name="Protein annotation" version="0.1">
	<description>Protein annotation</description>
	<requirements>
		<container type="docker">jjkoehorst/sappdocker:PROTEINANNOTATION</container>
	</requirements>
	<command interpreter="docker">java -jar /proteinannotation/target/proteinAnnotation-0.0.1-SNAPSHOT-jar-with-dependencies.jar '-input' '$input' '-output' '$output' -format TURTLE</command>
	<inputs>
		<param format="ttl" label="genome ttl file" name="input" type="data"/>
	</inputs>
	<outputs>
		<data format="ttl" label="Annotation: ${input.name}" name="output"/>
	</outputs>
</tool>