Mercurial > repos > jjohnson > fastq_mcf
annotate tool_dependencies.xml @ 1:b61f1466ce8f default tip
Add tool_dependencies.xml and test case
author | Jim Johnson <jj@umn.edu> |
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date | Mon, 01 Apr 2013 10:28:17 -0500 |
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b61f1466ce8f
Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
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1 <?xml version="1.0"?> |
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2 <tool_dependency> |
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3 <package name="ea-utils" version="1.1.2-484"> |
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4 <install version="1.0"> |
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5 <actions> |
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6 <action type="download_by_url">http://ea-utils.googlecode.com/files/ea-utils.1.1.2-484.tar.gz</action> |
b61f1466ce8f
Add tool_dependencies.xml and test case
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parents:
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7 <!-- Unable to get varcall to compile properly we don't need it, so skip --> |
b61f1466ce8f
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Jim Johnson <jj@umn.edu>
parents:
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8 <action type="shell_command">sed -i.bak 's/varcall$//' Makefile</action> |
b61f1466ce8f
Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
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9 <action type="shell_command">PREFIX=$INSTALL_DIR make install</action> |
b61f1466ce8f
Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
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10 <!-- For some reason, this is not installed by the Makefile, so move it ourselves --> |
b61f1466ce8f
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Jim Johnson <jj@umn.edu>
parents:
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11 <action type="move_file"> |
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Jim Johnson <jj@umn.edu>
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12 <source>sam-stats</source> |
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Jim Johnson <jj@umn.edu>
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13 <destination>$INSTALL_DIR/bin</destination> |
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14 </action> |
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15 <action type="set_environment"> |
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
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17 </action> |
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18 </actions> |
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Jim Johnson <jj@umn.edu>
parents:
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19 </install> |
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Jim Johnson <jj@umn.edu>
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20 <readme> |
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21 </readme> |
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22 </package> |
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23 </tool_dependency> |