Mercurial > repos > jjohnson > fastq_mcf
view tool_dependencies.xml @ 1:b61f1466ce8f default tip
Add tool_dependencies.xml and test case
author | Jim Johnson <jj@umn.edu> |
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date | Mon, 01 Apr 2013 10:28:17 -0500 |
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<?xml version="1.0"?> <tool_dependency> <package name="ea-utils" version="1.1.2-484"> <install version="1.0"> <actions> <action type="download_by_url">http://ea-utils.googlecode.com/files/ea-utils.1.1.2-484.tar.gz</action> <!-- Unable to get varcall to compile properly we don't need it, so skip --> <action type="shell_command">sed -i.bak 's/varcall$//' Makefile</action> <action type="shell_command">PREFIX=$INSTALL_DIR make install</action> <!-- For some reason, this is not installed by the Makefile, so move it ourselves --> <action type="move_file"> <source>sam-stats</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> </readme> </package> </tool_dependency>