Mercurial > repos > jjohnson > fastq_mcf
comparison tool_dependencies.xml @ 1:b61f1466ce8f default tip
Add tool_dependencies.xml and test case
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Mon, 01 Apr 2013 10:28:17 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 0:217aedbdd0d0 | 1:b61f1466ce8f |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="ea-utils" version="1.1.2-484"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://ea-utils.googlecode.com/files/ea-utils.1.1.2-484.tar.gz</action> | |
| 7 <!-- Unable to get varcall to compile properly we don't need it, so skip --> | |
| 8 <action type="shell_command">sed -i.bak 's/varcall$//' Makefile</action> | |
| 9 <action type="shell_command">PREFIX=$INSTALL_DIR make install</action> | |
| 10 <!-- For some reason, this is not installed by the Makefile, so move it ourselves --> | |
| 11 <action type="move_file"> | |
| 12 <source>sam-stats</source> | |
| 13 <destination>$INSTALL_DIR/bin</destination> | |
| 14 </action> | |
| 15 <action type="set_environment"> | |
| 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 17 </action> | |
| 18 </actions> | |
| 19 </install> | |
| 20 <readme> | |
| 21 </readme> | |
| 22 </package> | |
| 23 </tool_dependency> |