Mercurial > repos > jjohnson > mothur_toolsuite
annotate mothur/tool-data/mothur_taxonomy.loc.sample @ 24:09740be2bc9c
Mothur - updates for Mothur version 1.24
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Wed, 28 Mar 2012 15:45:03 -0500 |
parents | a6189f58fedb |
children |
rev | line source |
---|---|
15
a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
|
1 #This is a sample file distributed with Galaxy that enables tools |
a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
|
2 #to use a directory of metagenomics files. |
a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
|
3 #file has this format (white space characters are TAB characters): |
a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
|
4 # |
a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
|
5 # Silva reference files: http://www.mothur.org/wiki/Silva_reference_files |
a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
|
6 # |
a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
|
7 #<taxonomyname> <file_base> |
a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
|
8 # |
24
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
9 #archaea.gg /project/db/galaxy/mothur/Silva.archaea/silva.archaea.gg.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
10 #archaea.silva /project/db/galaxy/mothur/Silva.archaea/silva.archaea.silva.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
11 #archaea.rdp /project/db/galaxy/mothur/Silva.archaea/silva.archaea.rdp.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
12 #archaea.ncbi /project/db/galaxy/mothur/Silva.archaea/silva.archaea.ncbi.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
13 #bacteria.gg /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.gg.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
14 #bacteria.silva /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.silva.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
15 #bacteria.ncbi /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.ncbi.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
16 #bacteria.rdp /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
17 #bacteria.rdp6 /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp6.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
18 #eukarya.silva /project/db/galaxy/mothur/silva.eukarya.silva.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
19 #eukarya.ncbi /project/db/galaxy/mothur/silva.eukarya.ncbi.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
20 #trainset6_032010.rdp.tax /project/db/galaxy/mothur/RDP/trainset6_032010.rdp.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
21 #trainset7_112011.pds.tax /project/db/galaxy/mothur/RDP/trainset7_112011.pds.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
22 #trainset7_112011.rdp.tax /project/db/galaxy/mothur/RDP/trainset7_112011.rdp.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
23 #FungiLSU_train_1400bp_8506_mod.tax /project/db/galaxy/mothur/RDP/FungiLSU_train_1400bp_8506_mod.tax |
09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
15
diff
changeset
|
24 # |